SMTL ID : 4y6l.1 (1 other biounit)

Human SIRT2 in complex with myristoylated peptide (H3K9myr)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x THR- ALA- ARG- MYK- SER- THR- GLY: peptide THR-ALA-ARG-MYK-SER-THR-GLY(Non-covalent)

THR-ALA-ARG-MYK-SER-THR-GLY.1: 25 residues within 4Å: Chain A: I.42, F.45, F.68, F.80, A.84, L.87, P.89, F.92, I.118, D.119, H.136, F.139, I.181, V.182, F.183, F.184, G.185, E.186, S.187, L.188, F.193, Q.214, V.215, Q.216, P.217 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:I.42, A:F.45, A:F.45, A:F.45, A:F.80, A:L.87, A:F.92, A:I.118, A:I.118, A:D.119, A:F.139, A:I.181, A:F.184, A:F.184, A:L.188, A:F.193, A:V.215 Hydrogen bonds: A:H.136, A:V.182, A:G.185, A:E.186, A:Q.216, A:Q.216 Water bridges: A:S.187, A:S.187, A:S.187

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.144, C.149, C.170, C.173 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.144, A:C.149, A:C.170, A:C.173

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Feldman, J.L. et al., Kinetic and Structural Basis for Acyl-Group Selectivity and NAD(+) Dependence in Sirtuin-Catalyzed Deacylation. Biochemistry (2015)

Release Date

2016-01-06

Peptides

NAD-dependent protein deacetylase sirtuin-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NAD-dependent protein deacetylase sirtuin-2

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