SMTL ID : 5y0z.1 (1 other biounit)

Human SIRT2 in complex with a specific inhibitor, NPD11033

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.144, C.149, C.170, C.173 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.144, A:C.149, A:C.170, A:C.173

1 x 8K9: (1~{R},9~{S})-11-[(2~{R})-3-[2,4-bis(2-methylbutan-2-yl)phenoxy]-2-oxidanyl-propyl]-7,11-diazatricyclo[7.3.1.0^{2,7}]trideca-2,4-dien-6-one(Non-covalent)

8K9.2: 15 residues within 4Å: Chain A: I.42, F.45, R.46, Y.53, F.68, F.80, L.83, A.84, Y.88, P.89, I.118, H.136, F.139, V.182, F.184 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:I.42, A:I.42, A:F.45, A:R.46, A:F.68, A:F.68, A:F.68, A:F.68, A:F.80, A:F.80, A:L.83, A:A.84, A:Y.88, A:F.139, A:F.139, A:F.184

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kudo, N. et al., Identification of a novel small molecule that inhibits deacetylase but not defatty-acylase reaction catalysed by SIRT2. Philos. Trans. R. Soc. Lond., B, Biol. Sci. (2018)

Release Date

2018-07-25

Peptides

NAD-dependent protein deacetylase sirtuin-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NAD-dependent protein deacetylase sirtuin-2

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