SMTL ID : 4yee.2 (17 other biounits)

beta2 carbohydrate binding module (CBM) of AMP-activated protein kinase (AMPK) in complex with glucosyl-beta-cyclodextrin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x GLC- GLC- GLC- GLC- GLC- GLC- GLC- GLC: Cyclic alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-[alpha-D-glucopyranose-(1-6)]alpha-D-glucopyranose(Non-functional Binders)

GLC-GLC-GLC-GLC-GLC-GLC-GLC-GLC.1: 12 residues within 4Å: Chain A: S.27, W.33, S.34, T.35, K.36, K.60, W.67, S.78, Q.79, L.80, T.82, N.84 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.27, A:T.35, A:K.36

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: E.23, F.25, F.62, V.63, D.64, G.65 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.23, A:G.65 GOL.3: 5 residues within 4Å: Chain A: I.37, P.38, A.48, I.49, L.50 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.49, A:I.49 Water bridges: A:I.49, A:I.49, A:D.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mobbs, J.I. et al., Determinants of oligosaccharide specificity of the carbohydrate-binding modules of AMP-activated protein kinase. Biochem.J. (2015)

Release Date

2015-04-01

Peptides

5'-AMP-activated protein kinase subunit beta-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

5'-AMP-activated protein kinase subunit beta-2

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