SMTL ID : 4yfa.1 (1 other biounit)

Structure of N-acylhomoserine lactone acylase MacQ in complex with decanoic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-2-2-2-mer

Ligands

2 x DKA: DECANOIC ACID(Non-covalent)(Covalent)

DKA.1: 15 residues within 4Å: Chain A: A.155 Chain C: S.1, H.23, W.24, F.32, F.50, Q.57, I.58, H.68, T.69, V.70, W.165, P.188, W.189, V.190 16 PLIP interactions: 15 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: C:W.24, C:F.32, C:F.50, C:F.50, C:I.58, C:W.165, C:W.165, C:P.188, C:W.189, C:W.189, C:W.189, C:V.190, A:A.155 Hydrogen bonds: C:S.1, C:H.23, C:V.70 DKA.2: 14 residues within 4Å: Chain F: S.1, P.22, H.23, W.24, F.32, F.50, Q.57, I.58, H.68, T.69, V.70, W.165, W.189, N.278 11 PLIP interactions: 11 interactions with chain F Hydrophobic interactions: F:P.22, F:W.24, F:F.32, F:I.58, F:V.70, F:W.165, F:W.165, F:W.189 Hydrogen bonds: F:S.1, F:V.70, F:N.278

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yasutake, Y. et al., Bifunctional quorum-quenching and antibiotic-acylase MacQ forms a 170-kDa capsule-shaped molecule containing spacer polypeptides. Sci Rep (2017)

Release Date

2016-03-02

Peptides

Protein related to penicillin acylase: AD
Protein related to penicillin acylase: BE
Protein related to penicillin acylase: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
D

B
B

E
E

C
C

F
F

Protein related to penicillin acylase

Protein related to penicillin acylase

Protein related to penicillin acylase

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