SMTL ID : 4yfb.2 (1 other biounit)

Structure of N-acylhomoserine lactone acylase MacQ in complex with phenylacetic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

hetero-2-2-2-mer

Ligands

2 x PAC: 2-PHENYLACETIC ACID(Non-covalent)

PAC.1: 11 residues within 4Å: Chain C: S.1, P.22, W.24, F.32, F.50, I.58, H.68, T.69, V.70, W.189, V.190 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:P.22, C:W.24, C:F.32, C:F.50, C:F.50, C:I.58, C:H.68, C:V.190 Hydrogen bonds: C:S.1, C:V.70 pi-Stacking: C:W.24, C:W.189 PAC.3: 9 residues within 4Å: Chain F: S.1, W.24, F.32, F.50, Q.57, H.68, T.69, V.70, V.190 10 PLIP interactions: 10 interactions with chain F Hydrophobic interactions: F:W.24, F:F.32, F:F.32, F:F.50, F:H.68, F:V.190 Hydrogen bonds: F:S.1, F:V.70 Water bridges: F:N.278 pi-Stacking: F:W.24

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 9 residues within 4Å: Chain C: D.399, R.457, L.461, C.476, M.479, T.485, C.486, S.487, Y.496 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:D.399, C:T.485, C:S.487 Water bridges: C:R.457, C:S.487 GOL.4: 9 residues within 4Å: Chain F: D.399, R.457, L.461, C.476, M.479, T.485, C.486, S.487, Y.496 5 PLIP interactions: 5 interactions with chain F Hydrogen bonds: F:D.399, F:T.485, F:S.487, F:S.487 Water bridges: F:R.457

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yasutake, Y. et al., Bifunctional quorum-quenching and antibiotic-acylase MacQ forms a 170-kDa capsule-shaped molecule containing spacer polypeptides. Sci Rep (2017)

Release Date

2016-03-02

Peptides

Protein related to penicillin acylase: AD
Protein related to penicillin acylase: BE
Protein related to penicillin acylase: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

D
J

B
H

E
K

C
I

F
L

Protein related to penicillin acylase

Protein related to penicillin acylase

Protein related to penicillin acylase

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