SMTL ID : 4yg6.1 (3 other biounits)

Structural basis of glycan recognition in neonate-specific rotaviruses

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.46 Å

Oligo State

monomer

Ligands

1 x BGC- GAL- NAG- GAL: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose

BGC-GAL-NAG-GAL.1: 7 residues within 4Å: Chain A: N.93, Y.94, W.116, G.117, A.118, D.123, R.125 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.93, A:Y.94, A:Y.94, A:A.118, A:D.123, A:R.125, A:R.125, A:N.93, A:R.125 Hydrophobic interactions: A:W.116 Water bridges: A:R.92

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 4 residues within 4Å: Chain A: N.23, H.99, R.100, L.101 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.23, A:R.100 Water bridges: A:N.23 Salt bridges: A:R.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, L. et al., Structural basis of glycan specificity in neonate-specific bovine-human reassortant rotavirus. Nat Commun (2015)

Release Date

2015-09-30

Peptides

Outer capsid protein VP8*: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Outer capsid protein VP8*

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