SMTL ID : 4ynn.1 (1 other biounit)

Structure of Legionella pneumophila DegQ (S190A variant)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-12-mer

Ligands

3 x UNK- UNK- UNK- UNK- UNK- UNK- UNK- UNK: Octapeptide(Non-covalent)

UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.1: 14 residues within 4Å: Chain A: E.73, S.74, I.75, H.93, I.184, N.198, P.199, G.200, A.202, T.218, A.219, I.220, I.221, S.222 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.75, A:I.184 Hydrogen bonds: A:I.75, A:I.75, A:G.200, A:A.202, A:T.218, A:I.220, A:I.220, A:S.222, A:S.222 UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.9: 14 residues within 4Å: Chain E: E.73, S.74, I.75, H.93, I.184, N.198, P.199, G.200, A.202, T.218, A.219, I.220, I.221, S.222 11 PLIP interactions: 11 interactions with chain E Hydrophobic interactions: E:I.75, E:I.184 Hydrogen bonds: E:I.75, E:I.75, E:G.200, E:A.202, E:T.218, E:I.220, E:I.220, E:S.222, E:S.222 UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.17: 14 residues within 4Å: Chain I: E.73, S.74, I.75, H.93, I.184, N.198, P.199, G.200, A.202, T.218, A.219, I.220, I.221, S.222 11 PLIP interactions: 11 interactions with chain I Hydrophobic interactions: I:I.75, I:I.184 Hydrogen bonds: I:I.75, I:I.75, I:G.200, I:A.202, I:T.218, I:I.220, I:I.220, I:S.222, I:S.222

3 x UNK- UNK- UNK- UNK- UNK- UNK: Hexa-peptide(Non-covalent)

UNK-UNK-UNK-UNK-UNK-UNK.2: 12 residues within 4Å: Chain B: E.73, S.74, I.75, H.93, N.198, G.200, A.202, T.218, A.219, I.220, I.221, S.222 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:I.75 Hydrogen bonds: B:I.75, B:G.200, B:A.202, B:T.218, B:I.220, B:I.220, B:S.222, B:S.222 UNK-UNK-UNK-UNK-UNK-UNK.10: 12 residues within 4Å: Chain F: E.73, S.74, I.75, H.93, N.198, G.200, A.202, T.218, A.219, I.220, I.221, S.222 9 PLIP interactions: 9 interactions with chain F Hydrophobic interactions: F:I.75 Hydrogen bonds: F:I.75, F:G.200, F:A.202, F:T.218, F:I.220, F:I.220, F:S.222, F:S.222 UNK-UNK-UNK-UNK-UNK-UNK.18: 12 residues within 4Å: Chain J: E.73, S.74, I.75, H.93, N.198, G.200, A.202, T.218, A.219, I.220, I.221, S.222 9 PLIP interactions: 9 interactions with chain J Hydrophobic interactions: J:I.75 Hydrogen bonds: J:I.75, J:G.200, J:A.202, J:T.218, J:I.220, J:I.220, J:S.222, J:S.222

6 x UNK- UNK- UNK- UNK- UNK- UNK- UNK: Hepta-peptide(Non-covalent)

UNK-UNK-UNK-UNK-UNK-UNK-UNK.3: 13 residues within 4Å: Chain C: E.73, S.74, I.75, H.93, I.184, N.198, P.199, G.200, N.201, A.202, T.218, A.219, I.220 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:I.184 Hydrogen bonds: C:I.75, C:I.75, C:G.200, C:N.201, C:A.202, C:T.218, C:I.220, C:I.220 UNK-UNK-UNK-UNK-UNK-UNK-UNK.4: 12 residues within 4Å: Chain D: I.75, H.93, I.184, N.198, P.199, G.200, A.202, T.218, A.219, I.220, I.221, S.222 10 PLIP interactions: 10 interactions with chain D Hydrophobic interactions: D:I.75, D:I.184, D:I.221 Hydrogen bonds: D:I.75, D:G.200, D:A.202, D:T.218, D:I.220, D:I.220, D:S.222 UNK-UNK-UNK-UNK-UNK-UNK-UNK.11: 13 residues within 4Å: Chain G: E.73, S.74, I.75, H.93, I.184, N.198, P.199, G.200, N.201, A.202, T.218, A.219, I.220 9 PLIP interactions: 9 interactions with chain G Hydrophobic interactions: G:I.184 Hydrogen bonds: G:I.75, G:I.75, G:G.200, G:N.201, G:A.202, G:T.218, G:I.220, G:I.220 UNK-UNK-UNK-UNK-UNK-UNK-UNK.12: 12 residues within 4Å: Chain H: I.75, H.93, I.184, N.198, P.199, G.200, A.202, T.218, A.219, I.220, I.221, S.222 10 PLIP interactions: 10 interactions with chain H Hydrophobic interactions: H:I.75, H:I.184, H:I.221 Hydrogen bonds: H:I.75, H:G.200, H:A.202, H:T.218, H:I.220, H:I.220, H:S.222 UNK-UNK-UNK-UNK-UNK-UNK-UNK.19: 13 residues within 4Å: Chain K: E.73, S.74, I.75, H.93, I.184, N.198, P.199, G.200, N.201, A.202, T.218, A.219, I.220 9 PLIP interactions: 9 interactions with chain K Hydrophobic interactions: K:I.184 Hydrogen bonds: K:I.75, K:I.75, K:G.200, K:N.201, K:A.202, K:T.218, K:I.220, K:I.220 UNK-UNK-UNK-UNK-UNK-UNK-UNK.20: 12 residues within 4Å: Chain L: I.75, H.93, I.184, N.198, P.199, G.200, A.202, T.218, A.219, I.220, I.221, S.222 10 PLIP interactions: 10 interactions with chain L Hydrophobic interactions: L:I.75, L:I.184, L:I.221 Hydrogen bonds: L:I.75, L:G.200, L:A.202, L:T.218, L:I.220, L:I.220, L:S.222

12 x UNK- UNK- UNK: UNK-UNK-UNK(Non-covalent)

UNK-UNK-UNK.5: 7 residues within 4Å: Chain A: L.256, M.257, G.258, I.259, F.260, V.261, V.317 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.317 Hydrogen bonds: A:M.257, A:G.258, A:I.259, A:I.259, A:V.261, A:V.261 UNK-UNK-UNK.6: 5 residues within 4Å: Chain B: M.257, I.259, F.260, V.317, K.318 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:F.260, B:V.317, B:K.318 Hydrogen bonds: B:M.257, B:I.259 UNK-UNK-UNK.7: 7 residues within 4Å: Chain C: L.256, M.257, G.258, I.259, F.260, V.261, V.317 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:F.260, C:V.317 Hydrogen bonds: C:M.257, C:G.258, C:I.259, C:I.259, C:V.261 UNK-UNK-UNK.8: 7 residues within 4Å: Chain D: L.256, M.257, G.258, I.259, F.260, V.261, K.318 7 PLIP interactions: 7 interactions with chain D Hydrophobic interactions: D:F.260, D:K.318 Hydrogen bonds: D:M.257, D:G.258, D:I.259, D:V.261, D:V.261 UNK-UNK-UNK.13: 7 residues within 4Å: Chain E: L.256, M.257, G.258, I.259, F.260, V.261, V.317 7 PLIP interactions: 7 interactions with chain E Hydrophobic interactions: E:V.317 Hydrogen bonds: E:M.257, E:G.258, E:I.259, E:I.259, E:V.261, E:V.261 UNK-UNK-UNK.14: 5 residues within 4Å: Chain F: M.257, I.259, F.260, V.317, K.318 5 PLIP interactions: 5 interactions with chain F Hydrophobic interactions: F:F.260, F:V.317, F:K.318 Hydrogen bonds: F:M.257, F:I.259 UNK-UNK-UNK.15: 7 residues within 4Å: Chain G: L.256, M.257, G.258, I.259, F.260, V.261, V.317 7 PLIP interactions: 7 interactions with chain G Hydrophobic interactions: G:F.260, G:V.317 Hydrogen bonds: G:M.257, G:G.258, G:I.259, G:I.259, G:V.261 UNK-UNK-UNK.16: 7 residues within 4Å: Chain H: L.256, M.257, G.258, I.259, F.260, V.261, K.318 7 PLIP interactions: 7 interactions with chain H Hydrophobic interactions: H:F.260, H:K.318 Hydrogen bonds: H:M.257, H:G.258, H:I.259, H:V.261, H:V.261 UNK-UNK-UNK.21: 7 residues within 4Å: Chain I: L.256, M.257, G.258, I.259, F.260, V.261, V.317 7 PLIP interactions: 7 interactions with chain I Hydrophobic interactions: I:V.317 Hydrogen bonds: I:M.257, I:G.258, I:I.259, I:I.259, I:V.261, I:V.261 UNK-UNK-UNK.22: 5 residues within 4Å: Chain J: M.257, I.259, F.260, V.317, K.318 5 PLIP interactions: 5 interactions with chain J Hydrophobic interactions: J:F.260, J:V.317, J:K.318 Hydrogen bonds: J:M.257, J:I.259 UNK-UNK-UNK.23: 7 residues within 4Å: Chain K: L.256, M.257, G.258, I.259, F.260, V.261, V.317 7 PLIP interactions: 7 interactions with chain K Hydrophobic interactions: K:F.260, K:V.317 Hydrogen bonds: K:M.257, K:G.258, K:I.259, K:I.259, K:V.261 UNK-UNK-UNK.24: 7 residues within 4Å: Chain L: L.256, M.257, G.258, I.259, F.260, V.261, K.318 7 PLIP interactions: 7 interactions with chain L Hydrophobic interactions: L:F.260, L:K.318 Hydrogen bonds: L:M.257, L:G.258, L:I.259, L:V.261, L:V.261

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schubert, A. et al., Structures of DegQ from Legionella pneumophila Define Distinct ON and OFF States. J.Mol.Biol. (2015)

Release Date

2015-06-24

Peptides

Protease DO: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

C
G

D
H

E
A

F
D

G
G

H
H

I
A

J
D

K
G

L
H

Protease DO

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