SMTL ID : 4ynn.2 (1 other biounit)

Structure of Legionella pneumophila DegQ (S190A variant)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-12-mer

Ligands

3 x UNK- UNK- UNK- UNK- UNK- UNK: Hexa-peptide(Non-covalent)

UNK-UNK-UNK-UNK-UNK-UNK.1: 12 residues within 4Å: Chain A: I.75, H.93, I.184, N.198, P.199, G.200, N.201, A.202, T.218, A.219, I.220, I.221 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.75, A:I.184, A:I.221 Hydrogen bonds: A:I.75, A:G.200, A:N.201, A:A.202, A:T.218, A:I.220, A:I.220 UNK-UNK-UNK-UNK-UNK-UNK.7: 12 residues within 4Å: Chain E: I.75, H.93, I.184, N.198, P.199, G.200, N.201, A.202, T.218, A.219, I.220, I.221 10 PLIP interactions: 10 interactions with chain E Hydrophobic interactions: E:I.75, E:I.184, E:I.221 Hydrogen bonds: E:I.75, E:G.200, E:N.201, E:A.202, E:T.218, E:I.220, E:I.220 UNK-UNK-UNK-UNK-UNK-UNK.13: 12 residues within 4Å: Chain I: I.75, H.93, I.184, N.198, P.199, G.200, N.201, A.202, T.218, A.219, I.220, I.221 10 PLIP interactions: 10 interactions with chain I Hydrophobic interactions: I:I.75, I:I.184, I:I.221 Hydrogen bonds: I:I.75, I:G.200, I:N.201, I:A.202, I:T.218, I:I.220, I:I.220

9 x UNK- UNK- UNK- UNK- UNK- UNK- UNK: Hepta-peptide(Non-covalent)

UNK-UNK-UNK-UNK-UNK-UNK-UNK.2: 14 residues within 4Å: Chain B: E.73, S.74, I.75, H.93, I.184, N.198, P.199, G.200, A.202, T.218, A.219, I.220, I.221, S.222 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:I.184, B:I.221 Hydrogen bonds: B:I.75, B:G.200, B:A.202, B:T.218, B:I.220, B:I.220, B:S.222 UNK-UNK-UNK-UNK-UNK-UNK-UNK.3: 12 residues within 4Å: Chain C: E.73, I.75, H.93, I.184, N.198, G.200, A.202, T.218, A.219, I.220, I.221, S.222 11 PLIP interactions: 11 interactions with chain C Hydrophobic interactions: C:I.75, C:I.184, C:I.221 Hydrogen bonds: C:I.75, C:I.75, C:G.200, C:A.202, C:T.218, C:I.220, C:I.220, C:S.222 UNK-UNK-UNK-UNK-UNK-UNK-UNK.4: 13 residues within 4Å: Chain D: I.75, H.93, I.184, N.198, P.199, G.200, N.201, A.202, T.218, A.219, I.220, I.221, S.222 10 PLIP interactions: 10 interactions with chain D Hydrophobic interactions: D:I.75, D:I.184 Hydrogen bonds: D:I.75, D:G.200, D:N.201, D:A.202, D:T.218, D:I.220, D:I.220, D:S.222 UNK-UNK-UNK-UNK-UNK-UNK-UNK.8: 14 residues within 4Å: Chain F: E.73, S.74, I.75, H.93, I.184, N.198, P.199, G.200, A.202, T.218, A.219, I.220, I.221, S.222 9 PLIP interactions: 9 interactions with chain F Hydrophobic interactions: F:I.184, F:I.221 Hydrogen bonds: F:I.75, F:G.200, F:A.202, F:T.218, F:I.220, F:I.220, F:S.222 UNK-UNK-UNK-UNK-UNK-UNK-UNK.9: 12 residues within 4Å: Chain G: E.73, I.75, H.93, I.184, N.198, G.200, A.202, T.218, A.219, I.220, I.221, S.222 11 PLIP interactions: 11 interactions with chain G Hydrophobic interactions: G:I.75, G:I.184, G:I.221 Hydrogen bonds: G:I.75, G:I.75, G:G.200, G:A.202, G:T.218, G:I.220, G:I.220, G:S.222 UNK-UNK-UNK-UNK-UNK-UNK-UNK.10: 13 residues within 4Å: Chain H: I.75, H.93, I.184, N.198, P.199, G.200, N.201, A.202, T.218, A.219, I.220, I.221, S.222 10 PLIP interactions: 10 interactions with chain H Hydrophobic interactions: H:I.75, H:I.184 Hydrogen bonds: H:I.75, H:G.200, H:N.201, H:A.202, H:T.218, H:I.220, H:I.220, H:S.222 UNK-UNK-UNK-UNK-UNK-UNK-UNK.14: 14 residues within 4Å: Chain J: E.73, S.74, I.75, H.93, I.184, N.198, P.199, G.200, A.202, T.218, A.219, I.220, I.221, S.222 9 PLIP interactions: 9 interactions with chain J Hydrophobic interactions: J:I.184, J:I.221 Hydrogen bonds: J:I.75, J:G.200, J:A.202, J:T.218, J:I.220, J:I.220, J:S.222 UNK-UNK-UNK-UNK-UNK-UNK-UNK.15: 12 residues within 4Å: Chain K: E.73, I.75, H.93, I.184, N.198, G.200, A.202, T.218, A.219, I.220, I.221, S.222 11 PLIP interactions: 11 interactions with chain K Hydrophobic interactions: K:I.75, K:I.184, K:I.221 Hydrogen bonds: K:I.75, K:I.75, K:G.200, K:A.202, K:T.218, K:I.220, K:I.220, K:S.222 UNK-UNK-UNK-UNK-UNK-UNK-UNK.16: 13 residues within 4Å: Chain L: I.75, H.93, I.184, N.198, P.199, G.200, N.201, A.202, T.218, A.219, I.220, I.221, S.222 10 PLIP interactions: 10 interactions with chain L Hydrophobic interactions: L:I.75, L:I.184 Hydrogen bonds: L:I.75, L:G.200, L:N.201, L:A.202, L:T.218, L:I.220, L:I.220, L:S.222

6 x UNK- UNK- UNK: UNK-UNK-UNK(Non-covalent)

UNK-UNK-UNK.5: 6 residues within 4Å: Chain A: M.257, G.258, I.259, F.260, V.261, V.317 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.317 Hydrogen bonds: A:M.257, A:G.258, A:I.259, A:I.259, A:I.259, A:V.261, A:V.261 UNK-UNK-UNK.6: 9 residues within 4Å: Chain B: L.256, M.257, G.258, I.259, F.260, V.261, V.317, K.318, I.321 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:F.260, B:V.317, B:I.321 Hydrogen bonds: B:M.257, B:G.258, B:I.259, B:I.259, B:V.261, B:V.261 UNK-UNK-UNK.11: 6 residues within 4Å: Chain E: M.257, G.258, I.259, F.260, V.261, V.317 8 PLIP interactions: 8 interactions with chain E Hydrophobic interactions: E:V.317 Hydrogen bonds: E:M.257, E:G.258, E:I.259, E:I.259, E:I.259, E:V.261, E:V.261 UNK-UNK-UNK.12: 9 residues within 4Å: Chain F: L.256, M.257, G.258, I.259, F.260, V.261, V.317, K.318, I.321 9 PLIP interactions: 9 interactions with chain F Hydrophobic interactions: F:F.260, F:V.317, F:I.321 Hydrogen bonds: F:M.257, F:G.258, F:I.259, F:I.259, F:V.261, F:V.261 UNK-UNK-UNK.17: 6 residues within 4Å: Chain I: M.257, G.258, I.259, F.260, V.261, V.317 8 PLIP interactions: 8 interactions with chain I Hydrophobic interactions: I:V.317 Hydrogen bonds: I:M.257, I:G.258, I:I.259, I:I.259, I:I.259, I:V.261, I:V.261 UNK-UNK-UNK.18: 9 residues within 4Å: Chain J: L.256, M.257, G.258, I.259, F.260, V.261, V.317, K.318, I.321 9 PLIP interactions: 9 interactions with chain J Hydrophobic interactions: J:F.260, J:V.317, J:I.321 Hydrogen bonds: J:M.257, J:G.258, J:I.259, J:I.259, J:V.261, J:V.261

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schubert, A. et al., Structures of DegQ from Legionella pneumophila Define Distinct ON and OFF States. J.Mol.Biol. (2015)

Release Date

2015-06-24

Peptides

Protease DO: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

C
E

D
F

E
B

F
C

G
E

H
F

I
B

J
C

K
E

L
F

Protease DO

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