SMTL ID : 4yoz.1

p107 pocket domain in complex with HPV E7 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x ASP- LEU- TYR- CYS- TYR- GLU- GLN- LEU- ASN: HPV E7 peptide(Non-covalent)

ASP-LEU-TYR-CYS-TYR-GLU-GLN-LEU-ASN.1: 11 residues within 4Å: Chain A: Y.284, K.288, V.289, T.295, F.296, Q.297, D.328, I.330, Y.333, N.334, L.346 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:K.288, A:V.289, A:D.328, A:L.346 Hydrogen bonds: A:Y.284, A:Y.284, A:K.288, A:F.296, A:Q.297, A:Q.297, A:N.334, A:N.334

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: R.95, L.96 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.95 SO4.3: 4 residues within 4Å: Chain A: R.9, L.160, S.161, R.162 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.162 Water bridges: A:S.161, A:D.163 Salt bridges: A:R.9, A:R.162 SO4.4: 3 residues within 4Å: Chain A: N.249, R.252, R.253 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.253 Salt bridges: A:R.252 SO4.5: 4 residues within 4Å: Chain A: R.219, T.220, G.221, S.222 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.219, A:G.221, A:S.222 Salt bridges: A:R.219

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guiley, K.Z. et al., Structural mechanisms of DREAM complex assembly and regulation. Genes Dev. (2015)

Release Date

2015-06-24

Peptides

Retinoblastoma-like protein 1,Retinoblastoma-like protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Retinoblastoma-like protein 1,Retinoblastoma-like protein 1

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