SMTL ID : 4ywd.1

Structure of rat cytosolic pepck in complex with 2,3-Pyridine dicarboxylic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: K.244, H.264, D.311 Ligands: NTM.4 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.264, A:D.311, H2O.7 MN.2: 2 residues within 4Å: Chain A: H.502, E.607 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.502, A:E.607, H2O.3, H2O.5, H2O.6

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 3 residues within 4Å: Chain A: V.65, L.79, N.208 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.79, A:N.208

1 x NTM: QUINOLINIC ACID(Non-covalent)

NTM.4: 10 residues within 4Å: Chain A: R.87, K.243, K.244, H.264, S.286, D.311, F.333, R.405, F.485 Ligands: MN.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.333 Hydrogen bonds: A:S.286 Water bridges: A:N.403, A:N.403, A:N.403, A:R.405 Salt bridges: A:R.87, A:R.87, A:K.244, A:H.264, A:R.405

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Balan, M.D. et al., Inhibition and Allosteric Regulation of Monomeric Phosphoenolpyruvate Carboxykinase by 3-Mercaptopicolinic Acid. Biochemistry (2015)

Release Date

2015-09-23

Peptides

Phosphoenolpyruvate carboxykinase, cytosolic [GTP]: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phosphoenolpyruvate carboxykinase, cytosolic [GTP]

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