SMTL ID : 4z1t.1

MIF in complex with 4-[(4-oxo-2-thioxo-1,3-thiazolan-3-yl)methyl]benzonitrile

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-trimer

Ligands

2 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.1: 3 residues within 4Å: Chain A: Q.35, Y.36, W.108 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.36 IPA.3: 1 residues within 4Å: Chain B: R.86 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.86, B:R.86

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: G.68, G.69, A.70, Q.71 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.68, A:G.69, A:A.70, A:Q.71, A:Q.71 SO4.4: 4 residues within 4Å: Chain B: G.68, G.69, A.70, Q.71 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.69, B:A.70, B:Q.71 SO4.5: 6 residues within 4Å: Chain A: H.62, Y.99 Chain B: H.62, Y.99 Chain C: H.62, Y.99 5 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C, 3 interactions with chain B Hydrogen bonds: A:H.62, B:Y.99 Salt bridges: C:H.62 Water bridges: B:Y.99, B:Y.99 SO4.6: 4 residues within 4Å: Chain C: G.68, G.69, A.70, Q.71 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:G.69, C:A.70, C:Q.71, C:Q.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Singh, A.K. et al., Structural basis for decreased induction of class IB PI3-kinases expression by MIF inhibitors. J. Cell. Mol. Med. (2017)

Release Date

2016-09-28

Peptides

Macrophage migration inhibitory factor: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Macrophage migration inhibitory factor

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