SMTL ID : 4z33.1 (1 other biounit)

Crystal structure of the syntenin PDZ1 and PDZ2 tandem in complex with the Frizzled 7 C-terminal fragment and PIP2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

monomer

Ligands

1 x LYS- GLY- GLU- THR- ALA- VAL: LYS-GLY-GLU-THR-ALA-VAL(Non-covalent)

LYS-GLY-GLU-THR-ALA-VAL.1: 13 residues within 4Å: Chain A: H.99, V.100, G.101, F.102, I.103, F.104, K.105, T.110, D.142, S.143, A.146, L.149 Ligands: IP2.5 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:F.102, A:I.103, A:I.103, A:A.146, A:L.149 Hydrogen bonds: A:V.100, A:G.101, A:F.102, A:F.102, A:F.102, A:F.104, A:F.104, A:K.105, A:S.143, A:S.143 Salt bridges: A:H.99

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 1 residues within 4Å: Chain A: K.64 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.64 Salt bridges: A:K.64

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: H.93, S.117, R.120, N.121 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.117, A:N.121 Water bridges: A:H.93, A:H.93 GOL.4: 4 residues within 4Å: Chain A: K.15, I.16, G.17, L.18 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.16, A:G.17 Water bridges: A:H.66

1 x IP2: D-MYO-INOSITOL-4,5-BISPHOSPHATE(Non-covalent)

IP2.5: 5 residues within 4Å: Chain A: N.106, K.141, D.142, S.143 Ligands: LYS-GLY-GLU-THR-ALA-VAL.1 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.106, A:D.142, A:D.142, A:S.143, A:S.143 Water bridges: A:D.142, A:D.142 Salt bridges: A:K.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Egea-Jimenez, A.L. et al., Crystal structure of the syntenin PDZ1 and PDZ2 tandem in complex with the Frizzled 7 C-terminal fragment and PIP2. To Be Published

Release Date

2016-06-29

Peptides

Syntenin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Syntenin-1

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