SMTL ID : 4z33.2 (1 other biounit)

Crystal structure of the syntenin PDZ1 and PDZ2 tandem in complex with the Frizzled 7 C-terminal fragment and PIP2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

monomer

Ligands

1 x GLU- THR- ALA- VAL: LYS-GLY-GLU-THR-ALA-VAL(Non-covalent)

GLU-THR-ALA-VAL.1: 7 residues within 4Å: Chain A: H.99, V.100, G.101, F.102, I.103, F.104, L.149 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.102, A:I.103, A:I.103, A:F.104 Hydrogen bonds: A:V.100, A:G.101, A:F.102, A:F.102, A:F.104, A:F.104, A:F.104 Salt bridges: A:H.99

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 5 residues within 4Å: Chain A: K.15, I.16, G.17, L.18, H.66 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:K.15 Hydrogen bonds: A:I.16, A:G.17, A:L.18 Salt bridges: A:H.66 ACT.3: 4 residues within 4Å: Chain A: H.93, S.117, R.120, N.121 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.121 Water bridges: A:H.93 Salt bridges: A:H.93, A:R.120 ACT.4: 3 residues within 4Å: Chain A: L.140, K.141, Q.144 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.140, A:Q.144 Hydrogen bonds: A:K.141, A:Q.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Egea-Jimenez, A.L. et al., Crystal structure of the syntenin PDZ1 and PDZ2 tandem in complex with the Frizzled 7 C-terminal fragment and PIP2. To Be Published

Release Date

2016-06-29

Peptides

Syntenin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Syntenin-1

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