- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.21 Å
- Oligo State
- hetero-4-4-mer
- Ligands
- 16 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 8 x MTE: PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER(Non-covalent)
MTE.2: 19 residues within 4Å:- Chain A: R.77, M.94, M.95, G.96, S.182, S.183, S.248, K.321, C.322, Q.459, D.528, D.529, Q.533, C.534, A.535
- Ligands: MTE.3, W.4, MG.5, UNL.6
16 PLIP interactions:16 interactions with chain A- Hydrogen bonds: A:R.77, A:R.77, A:G.96, A:S.182, A:S.183, A:S.248, A:Q.459, A:Q.533, A:A.535
- Water bridges: A:M.94, A:M.94, A:G.97, A:D.529
- Salt bridges: A:R.77, A:K.321, A:D.529
MTE.3: 22 residues within 4Å:- Chain A: S.93, M.94, E.178, S.183, A.184, S.185, R.186, K.321, C.322, F.323, T.324, L.351, D.352, G.353, F.354, K.454, T.458, Q.459
- Ligands: MTE.2, W.4, MG.5, UNL.6
18 PLIP interactions:18 interactions with chain A- Hydrogen bonds: A:M.94, A:S.176, A:S.183, A:S.185, A:S.185, A:S.185, A:R.186, A:L.351, A:D.352, A:D.352, A:G.353, A:F.354, A:Q.459
- Water bridges: A:E.178, A:S.183, A:S.185
- Salt bridges: A:E.178, A:K.454
MTE.9: 19 residues within 4Å:- Chain B: R.77, M.94, M.95, G.96, S.182, S.183, S.248, K.321, C.322, Q.459, D.528, D.529, Q.533, C.534, A.535
- Ligands: MTE.10, W.11, MG.12, UNL.13
14 PLIP interactions:14 interactions with chain B- Hydrogen bonds: B:R.77, B:R.77, B:G.96, B:R.181, B:S.183, B:S.248, B:Q.459, B:Q.533, B:A.535
- Water bridges: B:H.525, B:H.525
- Salt bridges: B:R.77, B:K.321, B:D.529
MTE.10: 23 residues within 4Å:- Chain B: S.93, M.94, S.176, E.178, S.183, A.184, S.185, R.186, K.321, C.322, F.323, T.324, L.351, D.352, G.353, F.354, K.454, T.458, Q.459
- Ligands: MTE.9, W.11, MG.12, UNL.13
17 PLIP interactions:17 interactions with chain B- Hydrogen bonds: B:M.94, B:S.176, B:S.183, B:S.185, B:S.185, B:R.186, B:R.186, B:L.351, B:D.352, B:D.352, B:G.353, B:F.354, B:Q.459
- Water bridges: B:M.94, B:S.185
- Salt bridges: B:E.178, B:K.454
MTE.16: 19 residues within 4Å:- Chain C: R.77, M.94, M.95, G.96, S.182, S.183, S.248, K.321, C.322, Q.459, D.528, D.529, Q.533, C.534, A.535
- Ligands: MTE.17, MG.18, UNL.19, W.20
14 PLIP interactions:14 interactions with chain C- Hydrogen bonds: C:R.77, C:R.77, C:G.96, C:S.183, C:S.248, C:Q.459, C:Q.533, C:A.535
- Water bridges: C:G.97, C:R.181, C:D.529
- Salt bridges: C:R.77, C:K.321, C:D.529
MTE.17: 22 residues within 4Å:- Chain C: S.93, M.94, E.178, S.183, A.184, S.185, R.186, K.321, C.322, F.323, T.324, L.351, D.352, G.353, F.354, K.454, T.458, Q.459
- Ligands: MTE.16, MG.18, UNL.19, W.20
21 PLIP interactions:21 interactions with chain C- Hydrogen bonds: C:M.94, C:S.176, C:S.183, C:S.185, C:S.185, C:R.186, C:L.351, C:D.352, C:G.353, C:F.354, C:Q.459
- Water bridges: C:M.94, C:E.178, C:S.183, C:S.183, C:S.185, C:F.323, C:T.324, C:T.324
- Salt bridges: C:E.178, C:K.454
MTE.24: 19 residues within 4Å:- Chain D: R.77, M.94, M.95, G.96, S.182, S.183, S.248, K.321, C.322, Q.459, D.528, D.529, Q.533, C.534, A.535
- Ligands: UNL.22, MTE.25, W.26, MG.27
14 PLIP interactions:14 interactions with chain D- Hydrogen bonds: D:G.96, D:S.183, D:S.248, D:Q.459, D:Q.533, D:A.535
- Water bridges: D:R.77, D:R.77, D:G.97, D:R.181, D:D.529
- Salt bridges: D:R.77, D:K.321, D:D.529
MTE.25: 23 residues within 4Å:- Chain D: S.93, M.94, S.176, E.178, S.183, A.184, S.185, R.186, K.321, C.322, F.323, T.324, L.351, D.352, G.353, F.354, K.454, T.458, Q.459
- Ligands: UNL.22, MTE.24, W.26, MG.27
20 PLIP interactions:20 interactions with chain D- Hydrogen bonds: D:M.94, D:S.176, D:S.183, D:S.185, D:S.185, D:R.186, D:K.321, D:T.324, D:L.351, D:D.352, D:G.353, D:F.354, D:Q.459
- Water bridges: D:M.94, D:E.178, D:S.183, D:S.183, D:S.185
- Salt bridges: D:E.178, D:K.454
- 4 x W: TUNGSTEN ION(Non-covalent)
W.4: 4 residues within 4Å:- Chain A: C.322
- Ligands: MTE.2, MTE.3, UNL.6
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:C.322
W.11: 4 residues within 4Å:- Chain B: C.322
- Ligands: MTE.9, MTE.10, UNL.13
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:C.322
W.20: 4 residues within 4Å:- Chain C: C.322
- Ligands: MTE.16, MTE.17, UNL.19
1 PLIP interactions:1 interactions with chain C- Metal complexes: C:C.322
W.26: 4 residues within 4Å:- Chain D: C.322
- Ligands: UNL.22, MTE.24, MTE.25
1 PLIP interactions:1 interactions with chain D- Metal complexes: D:C.322
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.5: 4 residues within 4Å:- Chain A: M.94, S.183
- Ligands: MTE.2, MTE.3
5 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions, 1 Ligand-Ligand interactions- Metal complexes: A:M.94, A:S.183, H2O.1, H2O.3, MTE.3
MG.12: 5 residues within 4Å:- Chain B: M.94, M.95, S.183
- Ligands: MTE.9, MTE.10
5 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions, 1 Ligand-Ligand interactions- Metal complexes: B:M.94, B:S.183, H2O.6, H2O.7, MTE.10
MG.18: 5 residues within 4Å:- Chain C: M.94, S.183, A.184
- Ligands: MTE.16, MTE.17
5 PLIP interactions:2 interactions with chain C, 2 Ligand-Water interactions, 1 Ligand-Ligand interactions- Metal complexes: C:M.94, C:S.183, H2O.9, H2O.9, MTE.17
MG.27: 5 residues within 4Å:- Chain D: M.94, S.183, S.185
- Ligands: MTE.24, MTE.25
5 PLIP interactions:2 interactions with chain D, 2 Ligand-Water interactions, 1 Ligand-Ligand interactions- Metal complexes: D:M.94, D:S.183, H2O.12, H2O.12, MTE.25
- 4 x UNL: UNKNOWN LIGAND
UNL.6: 7 residues within 4Å:- Chain A: P.249, C.322, T.458
- Ligands: MTE.2, MTE.3, W.4, 4KX.7
No protein-ligand interaction detected (PLIP)UNL.13: 7 residues within 4Å:- Chain B: P.249, C.322, T.458
- Ligands: MTE.9, MTE.10, W.11, 4KX.14
No protein-ligand interaction detected (PLIP)UNL.19: 6 residues within 4Å:- Chain C: C.322, T.458
- Ligands: MTE.16, MTE.17, W.20, 4KX.21
No protein-ligand interaction detected (PLIP)UNL.22: 7 residues within 4Å:- Chain D: P.249, C.322, T.458
- Ligands: MTE.24, MTE.25, W.26, 4KX.28
No protein-ligand interaction detected (PLIP)- 4 x 4KX: 1,5 Dienoyl-CoA(Non-covalent)
4KX.7: 28 residues within 4Å:- Chain A: L.243, P.249, E.251, W.259, H.260, N.263, F.264, R.272, C.322, F.323, L.434, L.436, L.438, S.439, M.440, N.442, Y.445, Y.449, I.457, T.458, E.461, Q.466, P.499, R.500, S.504, M.505, F.540
- Ligands: UNL.6
27 PLIP interactions:27 interactions with chain A- Hydrophobic interactions: A:P.249, A:W.259, A:W.259, A:F.264, A:F.323, A:L.434, A:L.438, A:Y.445, A:T.458
- Hydrogen bonds: A:W.259, A:R.272, A:R.272, A:S.439, A:S.439, A:S.439, A:M.440, A:M.440, A:Y.445, A:Q.466, A:Q.466, A:R.500, A:S.504, A:S.504
- Water bridges: A:G.501
- pi-Stacking: A:F.323
- pi-Cation interactions: A:R.500, A:R.500
4KX.14: 27 residues within 4Å:- Chain B: I.242, L.243, P.249, E.251, W.259, H.260, N.263, F.264, R.272, C.322, F.323, L.434, L.436, L.438, S.439, M.440, N.442, Y.445, I.457, T.458, E.461, Q.466, R.500, S.504, M.505, F.540
- Ligands: UNL.13
22 PLIP interactions:22 interactions with chain B- Hydrophobic interactions: B:P.249, B:W.259, B:W.259, B:F.323, B:L.434, B:Y.445, B:T.458
- Hydrogen bonds: B:R.272, B:S.439, B:S.439, B:S.439, B:M.440, B:M.440, B:Y.449, B:Q.466, B:Q.466, B:Q.466, B:R.500, B:S.504, B:M.505
- pi-Stacking: B:F.323
- pi-Cation interactions: B:R.500
4KX.21: 31 residues within 4Å:- Chain C: I.242, L.243, P.249, E.251, W.259, H.260, N.263, F.264, R.272, C.322, F.323, L.434, L.436, L.438, S.439, M.440, N.442, Y.445, Y.449, I.457, T.458, E.461, Q.466, P.499, R.500, G.501, S.504, M.505, K.601, N.602
- Ligands: UNL.19
22 PLIP interactions:22 interactions with chain C- Hydrophobic interactions: C:P.249, C:W.259, C:F.323, C:L.438, C:Y.445, C:T.458
- Hydrogen bonds: C:R.272, C:R.272, C:S.439, C:S.439, C:S.439, C:M.440, C:M.440, C:Q.466, C:Q.466, C:Q.466, C:S.504, C:S.504, C:N.602
- pi-Stacking: C:F.323
- pi-Cation interactions: C:R.500, C:R.500
4KX.28: 30 residues within 4Å:- Chain D: I.242, L.243, P.249, E.251, W.259, H.260, N.263, F.264, C.322, F.323, L.434, L.436, L.438, S.439, M.440, N.442, Y.445, Y.449, I.457, T.458, E.461, Q.466, P.499, R.500, S.504, M.505, F.540, K.601, N.602
- Ligands: UNL.22
25 PLIP interactions:25 interactions with chain D- Hydrophobic interactions: D:P.249, D:F.264, D:F.323, D:F.323, D:L.434, D:L.438, D:Y.445, D:T.458
- Hydrogen bonds: D:W.259, D:S.439, D:S.439, D:S.439, D:S.439, D:M.440, D:M.440, D:Q.466, D:Q.466, D:Q.466, D:R.500, D:S.504, D:S.504
- Water bridges: D:N.442
- Salt bridges: D:K.601
- pi-Cation interactions: D:R.500, D:R.500
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Weinert, T. et al., Structural basis of enzymatic benzene ring reduction. Nat.Chem.Biol. (2015)
- Release Date
- 2015-06-24
- Peptides
- Benzoyl-CoA reductase, putative: ABCD
Iron-sulfur cluster-binding oxidoreductase, putative benzoyl-CoA reductase electron transfer protein: EFGH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
H
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.21 Å
- Oligo State
- hetero-4-4-mer
- Ligands
- 16 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 8 x MTE: PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER(Non-covalent)
- 4 x W: TUNGSTEN ION(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x UNL: UNKNOWN LIGAND
- 4 x 4KX: 1,5 Dienoyl-CoA(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Weinert, T. et al., Structural basis of enzymatic benzene ring reduction. Nat.Chem.Biol. (2015)
- Release Date
- 2015-06-24
- Peptides
- Benzoyl-CoA reductase, putative: ABCD
Iron-sulfur cluster-binding oxidoreductase, putative benzoyl-CoA reductase electron transfer protein: EFGH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
H