SMTL ID : 4z47.1

Structure of the enzyme-product complex resulting from TDG action on a GU mismatch in the presence of excess base

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: N.27, L.28, Q.119, P.120, R.121 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.28, A:R.121 Water bridges: A:N.27 EDO.2: 6 residues within 4Å: Chain A: L.150, Q.151, P.152, H.153, K.154, L.161 1 PLIP interactions: 1 interactions with chain A Water bridges: A:H.153 EDO.3: 6 residues within 4Å: Chain A: L.150, L.161, L.191, Q.194, L.195, I.198 No protein-ligand interaction detected (PLIP)

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.4: 6 residues within 4Å: Chain A: G.34, I.35, N.36, Y.48, N.87 Chain C: X.17 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.48 Hydrogen bonds: A:I.35 Water bridges: A:N.36

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Malik, S.S. et al., Thymine DNA glycosylase exhibits negligible affinity for nucleobases that it removes from DNA. Nucleic Acids Res. (2015)

Release Date

2015-09-16

Peptides

G/T mismatch-specific thymine DNA glycosylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

G/T mismatch-specific thymine DNA glycosylase

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