SMTL ID : 4z95.1

Fab structure of antibody S1-15 in complex with ssDNA DNA, 5'-5(dT)-p-3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

hetero-1-1-mer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 5 residues within 4Å: Chain A: Y.32, R.100, G.103, Y.108 Chain B: R.55 10 PLIP interactions: 9 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Y.32, A:Y.32, A:Y.32, A:Y.108, A:Y.108 Water bridges: A:R.100, A:R.100, A:R.100 Salt bridges: A:R.100, B:R.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Haji-Ghassemi, O. et al., Structural Basis for Antibody Recognition of Lipid A: INSIGHTS TO POLYSPECIFICITY TOWARD SINGLE-STRANDED DNA. J.Biol.Chem. (2015)

Release Date

2015-06-24

Peptides

S1-15 Fab (IgG2b) heavy chain: A
S1-15 Fab (IgG2b) light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

S1-15 Fab (IgG2b) heavy chain

S1-15 Fab (IgG2b) light chain

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