SMTL ID : 4zby.1

Family 4 uracil-DNA glycosylase from Sulfolobus tokodaii (uracil complex form)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.1: 12 residues within 4Å: Chain A: C.14, K.16, C.17, L.19, W.20, R.23, V.84, K.85, C.86, A.101, C.102, Y.105 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.14, A:C.17, A:C.86, A:C.102

1 x URA: URACIL(Non-covalent)

URA.2: 9 residues within 4Å: Chain A: G.41, E.42, A.43, G.45, E.48, P.54, F.55, N.82, H.164 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:E.48 Hydrogen bonds: A:E.42, A:A.43, A:F.55, A:N.82, A:N.82, A:H.164 pi-Stacking: A:F.55

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.3: 7 residues within 4Å: Chain A: G.122, R.123, I.140, T.141, Y.163, H.164, A.167 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.123, A:H.164 Water bridges: A:H.124

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kawai, A. et al., Crystal structure of family 4 uracil-DNA glycosylase from Sulfolobus tokodaii and a function of tyrosine 170 in DNA binding. Febs Lett. (2015)

Release Date

2015-09-09

Peptides

Uracil-DNA glycosylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Uracil-DNA glycosylase

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