SMTL ID : 4zc6.1

Crystal Structure of human GGT1 in complex with Serine Borate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 7 residues within 4Å: Chain A: N.68, T.70, T.71, H.121, R.123 Chain B: D.10, S.12 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.123 NAG.2: 6 residues within 4Å: Chain A: F.88, T.90, M.91, N.93, Q.97, L.103 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Q.97, A:L.103 Hydrogen bonds: A:M.91, A:N.93 Water bridges: A:M.91, A:Q.97 NAG.3: 5 residues within 4Å: Chain A: E.313, V.314, N.317, F.323, Q.326 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:E.313 Hydrogen bonds: A:E.313, A:E.313, A:N.317, A:Q.326, A:Q.326 NAG.4: 3 residues within 4Å: Chain A: N.239, V.246, Y.248 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.246 Water bridges: A:N.239, A:N.239 NAG.5: 4 residues within 4Å: Chain A: N.203, G.204, T.207, N.227 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.203, A:N.227 NAG.8: 6 residues within 4Å: Chain A: T.336, H.337, P.338, I.339 Chain B: N.131, H.151 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:I.339 Hydrogen bonds: A:I.339, B:H.151 Water bridges: B:N.131, B:N.131

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 5 residues within 4Å: Chain A: L.183, P.184, Q.185, L.186 Chain B: R.29 Ligand excluded by PLIP CL.10: 6 residues within 4Å: Chain A: D.19 Chain B: A.2, H.3, A.92, V.163, Q.165 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.7: 4 residues within 4Å: Chain A: H.9 Chain B: K.116, A.176, A.177 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:A.176 Water bridges: B:A.176, B:S.178

1 x SEE: trihydroxy(L-serinato-kappaO~3~)borate(1-)(Covalent)

SEE.9: 11 residues within 4Å: Chain A: R.80 Chain B: T.1, T.19, N.21, E.40, D.43, S.71, S.72, M.73, G.93, G.94 10 PLIP interactions: 9 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:T.1, B:T.19, B:N.21, B:S.72, B:S.72, B:M.73, B:G.93, B:G.94 Water bridges: B:N.21 Salt bridges: A:R.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Terzyan, S.S. et al., Human gamma-Glutamyl Transpeptidase 1: STRUCTURES OF THE FREE ENZYME, INHIBITOR-BOUND TETRAHEDRAL TRANSITION STATES, AND GLUTAMATE-BOUND ENZYME REVEAL NOVEL MOVEMENT WITHIN THE ACTIVE SITE DURING CATALYSIS. J.Biol.Chem. (2015)

Release Date

2015-06-03

Peptides

Gamma-glutamyltranspeptidase 1 heavy chain: A
Gamma-glutamyltranspeptidase 1 light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Gamma-glutamyltranspeptidase 1 heavy chain

Gamma-glutamyltranspeptidase 1 light chain

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