SMTL ID : 4zg3.1

In-vacuum long-wavelength crystallography

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

monomer

Ligands

2 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.1: 3 residues within 4Å: Chain A: R.29, E.35, S.36 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.29, A:R.29, A:E.35, A:E.35, A:S.36 Salt bridges: A:R.29 TLA.2: 4 residues within 4Å: Chain A: G.96, K.97, P.194, G.195 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.96, A:G.195, A:G.195 Salt bridges: A:K.97

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: E.89, I.105, F.181, V.184 Ligands: NA.8 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.89, A:V.184 GOL.4: 6 residues within 4Å: Chain A: G.47, F.90, S.91, Y.99, D.101, T.190 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.47, A:S.91, A:Y.99, A:T.190

6 x NA: SODIUM ION(Non-functional Binders)

NA.5: 6 residues within 4Å: Chain A: R.53, F.58, C.66, D.70, C.71, L.74 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.53, A:D.70, A:D.70, A:C.71, A:L.74 NA.6: 0 residues within 4Å: (No contacts) 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Q.133, A:Q.133 NA.7: 5 residues within 4Å: Chain A: P.111, A.127, C.204, P.205, T.206 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.127, A:T.206 NA.8: 4 residues within 4Å: Chain A: E.89, S.103, I.105 Ligands: GOL.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.89, A:S.103 NA.9: 5 residues within 4Å: Chain A: W.51, A.52, T.86, N.109, M.112 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.52, A:A.52, A:T.86, A:T.86, A:N.109 NA.10: 4 residues within 4Å: Chain A: D.147, A.148, Y.169, F.173 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.148 Water bridges: A:C.149, A:S.182, A:S.182

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wagner, A. et al., In-vacuum long-wavelength macromolecular crystallography. Acta Crystallogr D Struct Biol (2016)

Release Date

2016-03-09

Peptides

Thaumatin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Thaumatin-1

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