SMTL ID : 4zii.1

Crystal Structure of core/latch dimer of BaxI66A in complex with BidBH3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

hetero-2-2-mer

Ligands

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: D.53, S.55, T.56, L.59 Chain C: W.158, D.159 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.53 Water bridges: A:Q.18 EDO.2: 3 residues within 4Å: Chain A: M.20 Chain C: D.142, R.145 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:R.145 Water bridges: C:D.142, C:D.142 EDO.3: 3 residues within 4Å: Chain A: G.150, W.151, D.154 No protein-ligand interaction detected (PLIP) EDO.4: 4 residues within 4Å: Chain A: A.81, K.123, S.126 Chain C: L.45 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.81, A:K.123, A:S.126, A:S.126 EDO.5: 4 residues within 4Å: Chain A: P.88, A.124 Chain C: L.132, W.139 No protein-ligand interaction detected (PLIP) EDO.6: 6 residues within 4Å: Chain A: W.158, D.159 Chain C: D.53, S.55, T.56, L.59 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:D.53, A:D.159 Water bridges: C:Q.18 EDO.7: 3 residues within 4Å: Chain A: D.142, R.145 Chain C: M.20 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.145 Water bridges: A:D.142, A:D.142 EDO.8: 3 residues within 4Å: Chain C: G.150, W.151, D.154 No protein-ligand interaction detected (PLIP) EDO.9: 4 residues within 4Å: Chain A: L.45 Chain C: A.81, K.123, S.126 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:A.81, C:K.123, C:S.126, C:S.126 EDO.10: 4 residues within 4Å: Chain A: L.132, W.139 Chain C: P.88, A.124 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Robin, A.Y. et al., Crystal structure of Bax bound to the BH3 peptide of Bim identifies important contacts for interaction. Cell Death Dis (2015)

Release Date

2015-07-22

Peptides

Apoptosis regulator BAX: AC
BH3-interacting domain death agonist: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
C

D
C

Apoptosis regulator BAX

BH3-interacting domain death agonist

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