SMTL ID : 7qtw.1

Kaposi sarcoma associated herpes virus(KSHV) encoded apoptosis inhibitor, KsBcl-2 in complex with Bid BH3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.41 Å

Oligo State

hetero-1-1-mer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: G.13, E.14, A.17, H.35, L.37, L.38, W.139 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.14, A:W.139 EDO.2: 8 residues within 4Å: Chain A: S.82, G.85, N.86, M.87, A.127, I.128, G.129, W.132 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.85, A:I.128 Water bridges: A:S.82 EDO.3: 7 residues within 4Å: Chain A: A.24, C.25, N.28, K.42, L.43, T.46 Ligands: EDO.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.28 EDO.4: 5 residues within 4Å: Chain A: A.24, N.28, E.29, P.30 Ligands: EDO.3 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Suraweera, C.D. et al., Structural Insight into KsBcl-2 Mediated Apoptosis Inhibition by Kaposi Sarcoma Associated Herpes Virus. Viruses (2022)

Release Date

2022-11-23

Peptides

Bcl-2: A
BH3-interacting domain death agonist p15: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Bcl-2

BH3-interacting domain death agonist p15

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