SMTL ID : 4zjf.1 (3 other biounits)

Crystal structure of GP1 - the receptor binding domain of Lassa virus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: H.50, F.52, N.54 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 8 residues within 4Å: Chain A: N.49, H.50, K.51, M.88, S.89, Q.100, N.102, Y.154 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.46, A:K.51

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 5 residues within 4Å: Chain A: N.24, N.44, S.151, Y.152, Q.153 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.152 Hydrogen bonds: A:N.44 NAG.4: 6 residues within 4Å: Chain A: V.32, G.37, L.38, H.66, G.95, N.159 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.32, A:L.38 Hydrogen bonds: A:H.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cohen-Dvashi, H. et al., Molecular Mechanism for LAMP1 Recognition by Lassa Virus. J.Virol. (2015)

Release Date

2015-05-27

Peptides

Glycoprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycoprotein

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