SMTL ID : 5ft2.1

Sub-tomogram averaging of Lassa virus glycoprotein spike from virus- like particles at pH 5

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY 16.40 Å

Oligo State

monomer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 6 residues within 4Å: Chain A: N.24, N.44, S.106, S.151, Y.152, Q.153 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.106, A:S.106 NAG-NAG.2: 10 residues within 4Å: Chain A: S.46, N.49, H.50, K.51, A.87, M.88, S.89, Q.100, N.102, Y.154 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.51

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 7 residues within 4Å: Chain A: V.32, T.36, L.38, H.66, G.95, K.96, N.159 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.32, A:L.38 Hydrogen bonds: A:T.36, A:T.36, A:T.36, A:H.66, A:K.96 Water bridges: A:N.159 NAG.4: 2 residues within 4Å: Chain A: H.50, N.54 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, S. et al., Acidic Ph-Induced Conformations and Lamp1 Binding of the Lassa Virus Glycoprotein Spike. Plos Pathog. (2016)

Release Date

2016-03-02

Peptides

PRE-GLYCOPROTEIN POLYPROTEIN GP COMPLEX: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

PRE-GLYCOPROTEIN POLYPROTEIN GP COMPLEX

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