SMTL ID : 4zkl.1 (1 other biounit)

Crystal structure of human histidine triad nucleotide-binding protein 1 (hHINT1) complexed with JB419 (AP4A analog)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.34 Å

Oligo State

homo-dimer

Ligands

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 15 residues within 4Å: Chain B: F.19, I.22, F.41, H.42, D.43, I.44, S.45, N.99, G.105, Q.106, S.107, V.108, H.112, H.114 Ligands: JB6.2 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:I.44, B:S.45, B:S.45, B:N.99, B:G.105, B:S.107, B:V.108 Water bridges: B:N.99 Salt bridges: B:H.112, B:H.114

1 x JB6: (2R,3R,4S,5R)-2-(6-aminopurin-9-yl)-5-[2-[[(2S)-3-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-sulfanyl-phosphoryl]oxy-2-oxidanyl-propoxy]-sulfanyl-phosphoryl]oxyethyl]oxolane-3,4-diol(Covalent)

JB6.2: 16 residues within 4Å: Chain B: I.18, F.19, I.22, F.41, H.42, D.43, I.44, S.45, L.53, G.105, Q.106, S.107, V.108, H.112, H.114 Ligands: AMP.1 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:I.44, B:S.45, B:S.107, B:V.108 Water bridges: B:Q.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dolot, R. et al., Crystallographic studies of the complex of human HINT1 protein with a non-hydrolyzable analog of Ap4A. Int.J.Biol.Macromol. (2016)

Release Date

2016-03-02

Peptides

Histidine triad nucleotide-binding protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Histidine triad nucleotide-binding protein 1

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