SMTL ID : 4zmg.1

Crystal structure of Human Dihydroorotate Dehydrogenase (DHODH) with DH03A338

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 25 residues within 4Å: Chain A: A.89, A.90, G.91, K.94, G.113, S.114, N.139, Y.141, N.175, N.206, K.249, T.277, N.278, T.279, S.299, G.300, L.303, V.327, G.328, G.329, L.349, Y.350, T.351 Ligands: ORO.2, 4R5.3 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:N.139, A:Y.141, A:Y.350, A:Y.350 Hydrogen bonds: A:A.90, A:K.94, A:S.114, A:S.114, A:N.175, A:K.249, A:K.249, A:N.278, A:G.300, A:G.329, A:Y.350, A:T.351 Water bridges: A:A.90, A:G.328, A:V.330, A:V.330, A:V.330

1 x ORO: OROTIC ACID(Non-covalent)

ORO.2: 13 residues within 4Å: Chain A: K.94, N.139, R.140, Y.141, G.142, F.143, N.206, S.209, P.210, N.211, N.278, T.279 Ligands: FMN.1 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.143 Hydrogen bonds: A:N.139, A:N.139, A:G.142, A:F.143, A:N.206, A:N.211, A:N.278, A:N.278, A:T.279 Water bridges: A:S.209, A:S.209 Salt bridges: A:K.94

1 x 4R5: 1-(3,5-difluoro-3'-methoxybiphenyl-4-yl)-3-(1,3-thiazol-5-yl)urea(Non-covalent)

4R5.3: 16 residues within 4Å: Chain A: Y.32, M.37, P.46, A.49, H.50, A.53, T.57, L.61, L.62, F.92, V.128, Y.350, L.353, T.354, P.358 Ligands: FMN.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:A.53, A:L.62, A:P.358 Hydrogen bonds: A:Y.350 Water bridges: A:Q.41, A:T.354

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 3 residues within 4Å: Chain A: R.239, V.241, H.242 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.239, A:H.242 SO4.5: 1 residues within 4Å: Chain A: K.164 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Q.160 Salt bridges: A:K.164

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.6: 4 residues within 4Å: Chain A: D.305, T.308, Q.309, R.312 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.312

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ren, X.L. et al., Crystal structure of Human Dihydroorotate Dehydrogenase (DHODH) with DH03A338. To Be Published

Release Date

2016-05-04

Peptides

Dihydroorotate dehydrogenase (quinone), mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dihydroorotate dehydrogenase (quinone), mitochondrial

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