SMTL ID : 4znl.3 (2 other biounits)

Thermus Phage P74-26 Large Terminase ATPase domain bound to ADP Beryllium Fluoride

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.07 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: S.49, D.154 Ligands: BEF.2, ADP.3 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:S.49, H2O.1, H2O.1, H2O.5

1 x BEF: BERYLLIUM TRIFLUORIDE ION(Non-covalent)

BEF.2: 7 residues within 4Å: Chain A: R.44, Q.45, K.48, E.155, T.184 Ligands: MG.1, ADP.3 No protein-ligand interaction detected (PLIP)

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.3: 16 residues within 4Å: Chain A: Y.21, K.22, P.23, H.24, Q.27, R.44, Q.45, S.46, G.47, K.48, S.49, E.50, R.84, W.230 Ligands: MG.1, BEF.2 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:K.22, A:H.24, A:Q.27, A:Q.45, A:S.46, A:G.47, A:K.48, A:S.49, A:E.50, A:E.50 Water bridges: A:K.22, A:S.49, A:R.84, A:K.88 Salt bridges: A:K.48, A:R.84 pi-Stacking: A:W.230, A:W.230

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 4 residues within 4Å: Chain A: Q.104, R.105, R.106, R.107 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.106, A:R.107 Water bridges: A:R.105, A:R.105 Salt bridges: A:R.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hilbert, B.J. et al., Structure and mechanism of the ATPase that powers viral genome packaging. Proc.Natl.Acad.Sci.USA (2015)

Release Date

2015-07-08

Peptides

Phage terminase large subunit: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Phage terminase large subunit

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