SMTL ID : 4zr1.2 (1 other biounit)

Hydroxylase domain of scs7p

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.177, H.232, H.236, H.251, H.255 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.177, A:H.232, A:H.236, A:H.251, A:H.255 ZN.2: 5 residues within 4Å: Chain A: H.150, H.155, H.174, H.178, H.254 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.150, A:H.155, A:H.174, A:H.178, A:H.254

2 x BOG: octyl beta-D-glucopyranoside(Non-covalent)

BOG.3: 9 residues within 4Å: Chain A: P.98, K.101, T.102, W.105, V.106, A.110, W.111, V.114, P.191 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.111, A:V.114, A:P.191 Hydrogen bonds: A:K.101, A:T.102, A:A.103 BOG.4: 1 residues within 4Å: Chain A: W.159 No protein-ligand interaction detected (PLIP)

6 x TRD: TRIDECANE(Non-covalent)

TRD.5: 11 residues within 4Å: Chain A: G.138, V.141, W.142, I.145, L.149, F.194, L.197, C.198, V.205, G.217, G.221 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.141, A:I.145, A:L.149, A:F.194, A:L.197, A:V.205 TRD.6: 11 residues within 4Å: Chain A: L.99, T.100, L.172, L.173, H.174, H.177, R.186, L.187, M.189, P.190, L.193 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:T.100, A:L.172, A:H.177, A:L.193 TRD.7: 2 residues within 4Å: Chain A: W.105 Ligands: TRD.9 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.105, A:W.105, A:W.105 TRD.8: 4 residues within 4Å: Chain A: W.104, P.108, E.230, F.234 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:P.108, A:E.230, A:F.234, A:F.234, A:F.234 TRD.9: 3 residues within 4Å: Chain A: W.104, W.105 Ligands: TRD.7 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.104, A:W.105, A:W.105 TRD.10: 6 residues within 4Å: Chain A: V.116, Y.117, G.120, V.121, L.123, K.124 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.116, A:Y.117, A:V.121, A:L.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, G. et al., The Crystal Structure of an Integral Membrane Fatty Acid alpha-Hydroxylase. J.Biol.Chem. (2015)

Release Date

2015-07-29

Peptides

Ceramide very long chain fatty acid hydroxylase SCS7: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Membrane

We predict this structure to be a membrane protein.
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Ceramide very long chain fatty acid hydroxylase SCS7

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