SMTL ID : 4zs3.1

Structural complex of 5-aminofluorescein bound to the FTO protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

monomer

Ligands

1 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.1: 13 residues within 4Å: Chain A: R.69, N.178, V.201, H.204, V.217, Y.268, V.282, R.289, S.291, T.293, R.295 Ligands: A4F.2, MN.3 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.282, A:T.293 Hydrogen bonds: A:N.178, A:Y.268, A:S.291, A:R.295 Water bridges: A:R.295 Salt bridges: A:R.69, A:H.204, A:R.289

1 x A4F: 5-amino-2-(6-hydroxy-3-oxo-3H-xanthen-9-yl)benzoic acid(Non-covalent)

A4F.2: 13 residues within 4Å: Chain A: I.58, L.63, L.64, P.66, R.69, Y.81, L.82, A.200, V.201, S.202, W.203, H.204 Ligands: AKG.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.58, A:V.201, A:H.204 Hydrogen bonds: A:L.64, A:R.69, A:R.69, A:S.202 pi-Stacking: A:H.204, A:H.204

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.3: 4 residues within 4Å: Chain A: H.204, D.206, H.280 Ligands: AKG.1 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.280, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, T. et al., Fluorescein Derivatives as Bifunctional Molecules for the Simultaneous Inhibiting and Labeling of FTO Protein. J.Am.Chem.Soc. (2015)

Release Date

2015-11-04

Peptides

Alpha-ketoglutarate-dependent dioxygenase FTO: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha-ketoglutarate-dependent dioxygenase FTO

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