- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.42 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 4 x K: POTASSIUM ION(Non-covalent)
K.3: 6 residues within 4Å:- Chain A: D.193, D.195, H.197, S.216, L.217, H.218
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:D.193, A:D.195, A:H.197, A:S.216, A:L.217
K.4: 4 residues within 4Å:- Chain A: F.206, R.209, V.212, T.243
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:F.206, A:R.209, A:V.212, A:T.243, H2O.5
K.12: 6 residues within 4Å:- Chain B: D.193, D.195, H.197, S.216, L.217, H.218
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:D.193, B:D.195, B:H.197, B:S.216, B:L.217
K.13: 4 residues within 4Å:- Chain B: F.206, R.209, V.212, T.243
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:F.206, B:R.209, B:V.212, B:T.243, H2O.22
- 2 x 5XA: 5-amino-N-hydroxypentanamide(Non-covalent)
5XA.5: 11 residues within 4Å:- Chain A: E.117, H.158, H.159, G.167, Y.168, D.195, H.197, F.225, D.284, Y.323
- Ligands: ZN.1
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:F.225, A:F.225
- Hydrogen bonds: A:E.117, A:E.117, A:Y.168
- Water bridges: A:E.17
5XA.14: 12 residues within 4Å:- Chain B: E.117, H.158, H.159, G.167, Y.168, D.195, H.197, F.225, D.284, I.291, Y.323
- Ligands: ZN.10
8 PLIP interactions:7 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:Y.168, B:Y.168, B:F.225, B:I.291
- Hydrogen bonds: B:E.117, B:H.159, B:Y.323
- Water bridges: A:T.90
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.6: 6 residues within 4Å:- Chain A: K.15, W.75, K.84, G.85, E.86, P.122
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.15, A:K.84
- Water bridges: A:E.86
GOL.9: 4 residues within 4Å:- Chain A: Y.231, A.232, E.233
- Chain B: R.100
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:A.232, A:E.233
GOL.15: 6 residues within 4Å:- Chain A: L.229, E.234
- Chain B: R.96, T.97, S.98, P.99
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:R.96
- Water bridges: A:E.233, A:E.234
GOL.18: 4 residues within 4Å:- Chain B: L.266, T.307, A.310, S.311
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:T.307
- Water bridges: B:L.266, B:A.270
- 4 x NO3: NITRATE ION(Non-functional Binders)
NO3.7: 3 residues within 4Å:- Chain A: M.1, F.45, A.340
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:M.1
- Water bridges: A:A.340
NO3.8: 4 residues within 4Å:- Chain A: H.146, K.147, A.148
- Ligands: ZN.2
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.147, A:A.148, A:A.148
NO3.16: 3 residues within 4Å:- Chain B: M.1, F.45, A.340
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:M.1
NO3.17: 4 residues within 4Å:- Chain B: H.146, K.147, A.148
- Ligands: ZN.11
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:K.147, B:A.148
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Decroos, C. et al., Design, Synthesis, and Evaluation of Polyamine Deacetylase Inhibitors, and High-Resolution Crystal Structures of Their Complexes with Acetylpolyamine Amidohydrolase. Biochemistry (2015)
- Release Date
- 2015-07-29
- Peptides
- Acetylpolyamine aminohydrolase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.42 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 4 x K: POTASSIUM ION(Non-covalent)
- 2 x 5XA: 5-amino-N-hydroxypentanamide(Non-covalent)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 4 x NO3: NITRATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Decroos, C. et al., Design, Synthesis, and Evaluation of Polyamine Deacetylase Inhibitors, and High-Resolution Crystal Structures of Their Complexes with Acetylpolyamine Amidohydrolase. Biochemistry (2015)
- Release Date
- 2015-07-29
- Peptides
- Acetylpolyamine aminohydrolase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B