SMTL ID : 4zyx.1

Human GAR transformylase in complex with GAR and (S)-2-({4-[4-(2-Amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]-pyrimidin-6-yl)butyl]thiophene-2-carbonyl}amino)pentanedioic acid (AGF117)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x GAR: GLYCINAMIDE RIBONUCLEOTIDE(Non-covalent)

GAR.1: 12 residues within 4Å: Chain A: T.11, G.12, S.13, N.14, G.88, M.90, N.107, I.108, P.110, K.171, E.174 Ligands: 3YB.2 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:T.11, A:G.12, A:S.13, A:S.13, A:N.14, A:N.14, A:N.107, A:I.108, A:I.108, A:E.174, A:E.174 Water bridges: A:T.11, A:L.15, A:G.88, A:H.109 Salt bridges: A:K.171

1 x 3YB: N-({4-[4-(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-6-yl)butyl]thiophen-2-yl}carbonyl)-L-glutamic acid(Non-covalent)

3YB.2: 19 residues within 4Å: Chain A: R.65, L.86, F.89, M.90, R.91, I.92, L.93, V.98, N.107, G.118, S.119, H.138, V.140, A.141, E.142, D.143, V.144, D.145 Ligands: GAR.1 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.86 Hydrogen bonds: A:M.90, A:M.90, A:R.91, A:I.92, A:L.93, A:L.93, A:A.141, A:D.145 Water bridges: A:A.141, A:A.146 Salt bridges: A:K.38, A:R.65, A:R.91, A:R.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Deis, S.M. et al., Structural and Enzymatic Analysis of Tumor-Targeted Antifolates That Inhibit Glycinamide Ribonucleotide Formyltransferase. Biochemistry (2016)

Release Date

2016-04-20

Peptides

Trifunctional purine biosynthetic protein adenosine-3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Trifunctional purine biosynthetic protein adenosine-3

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