SMTL ID : 4zz1.1

HUMAN GAR TRANSFORMYLASE IN COMPLEX WITH GAR AND (S)-2-({4-[3-(2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]PYRIMIDIN-6-YL)-PROPYL]-THIOPHENE-2-CARBONYL}-AMINO)-PENTANEDIOIC ACID

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

monomer

Ligands

1 x GAR: GLYCINAMIDE RIBONUCLEOTIDE(Non-covalent)

GAR.1: 12 residues within 4Å: Chain A: T.11, G.12, S.13, N.14, G.88, M.90, I.108, P.110, G.118, K.171, E.174 Ligands: 3YF.2 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:T.11, A:G.12, A:S.13, A:S.13, A:N.14, A:N.14, A:I.108, A:E.174, A:E.174 Water bridges: A:T.11, A:T.11, A:L.15, A:A.87, A:G.88, A:G.88, A:D.145 Salt bridges: A:K.171

1 x 3YF: (S)-2-({4-[3-(2-Amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-6-yl)-propyl]-thiophene-2-carbonyl}-amino)-pentanedioic acid(Non-covalent)

3YF.2: 19 residues within 4Å: Chain A: R.65, L.86, F.89, M.90, R.91, I.92, L.93, V.98, N.107, G.118, S.119, H.138, V.140, A.141, E.142, D.143, V.144, D.145 Ligands: GAR.1 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:L.86, A:I.92, A:V.140 Hydrogen bonds: A:M.90, A:R.91, A:I.92, A:L.93, A:L.93, A:A.141, A:D.145 Water bridges: A:K.38, A:K.38, A:R.91, A:R.91, A:S.119, A:S.119, A:A.141, A:A.141 Salt bridges: A:K.38, A:R.65, A:R.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, L. et al., 6-Substituted Pyrrolo[2,3-d]pyrimidine Thienoyl Regioisomers as Targeted Antifolates for Folate Receptor alpha and the Proton-Coupled Folate Transporter in Human Tumors. J.Med.Chem. (2015)

Release Date

2015-12-16

Peptides

Trifunctional purine biosynthetic protein adenosine-3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Trifunctional purine biosynthetic protein adenosine-3

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