SMTL ID : 4zzt.1

Geotrichum candidum Cel7A structure complex with thio-linked cellotriose at 1.56A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.56 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN.1: 6 residues within 4Å: Chain A: Q.190, G.205, N.206, V.237, C.238, N.239 3 PLIP interactions: 3 interactions with chain A Water bridges: A:Q.190, A:N.239 Hydrophobic interactions: A:F.182, A:F.182 Hydrogen bonds: A:N.160

2 x SGC- SGC- BGC: beta-D-glucopyranose-(1-4)-4-thio-beta-D-glucopyranose-(1-4)-4-thio-beta-D-glucopyranose

SGC-SGC-BGC.2: 17 residues within 4Å: Chain A: Q.175, E.212, E.217, H.228, T.246, Y.247, R.251, P.258, D.259, R.267, D.343, W.371, D.373, Y.375, W.380, R.399 Ligands: SGC-SGC-BGC.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.212, A:T.246, A:Y.247, A:Y.247, A:D.373, A:R.251, A:R.251, A:D.259 Water bridges: A:H.228 SGC-SGC-BGC.3: 16 residues within 4Å: Chain A: N.37, W.38, V.104, R.107, Y.145, Y.171, D.173, D.179, L.180, K.181, N.200, S.201, Y.247, S.369, W.371 Ligands: SGC-SGC-BGC.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.37, A:V.104, A:K.181, A:K.181, A:K.181, A:R.107, A:R.107, A:D.372 Water bridges: A:Y.247, A:D.372

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 5 residues within 4Å: Chain A: T.48, N.49, N.57, L.60 Ligands: GOL.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.57 Water bridges: A:T.48, A:N.49 NAG.5: 3 residues within 4Å: Chain A: F.306, I.431, N.432 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.431 Hydrogen bonds: A:N.432 Water bridges: A:Q.291

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 8 residues within 4Å: Chain A: N.49, C.50, Y.51, T.52, T.55, W.56, N.57 Ligands: NAG.4 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.49, A:T.52, A:T.55, A:T.55 Water bridges: A:W.56, A:W.56, A:T.58 GOL.7: 5 residues within 4Å: Chain A: T.85, S.87, S.90, R.92, I.422 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.85, A:T.85, A:R.92 GOL.8: 4 residues within 4Å: Chain A: V.312, V.313, P.315, T.438 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.438 GOL.9: 6 residues within 4Å: Chain A: D.64, T.65, S.186, Q.190, N.206 Ligands: MG.12 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.65, A:T.65, A:S.186, A:N.206 Water bridges: A:D.64, A:D.64, A:Q.190 GOL.10: 5 residues within 4Å: Chain A: N.124, T.294, D.295, S.296, G.298 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.124, A:T.294, A:G.298 GOL.11: 1 residues within 4Å: Chain A: D.231 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.349 Water bridges: A:D.231, A:D.231

1 x MG: MAGNESIUM ION(Non-covalent)

MG.12: 3 residues within 4Å: Chain A: D.64, N.206 Ligands: GOL.9 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.64, H2O.4, H2O.4, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Borisova, A.S. et al., Sequencing, Biochemical Characterization, Crystal Structure and Molecular Dynamics of Cellobiohydrolase Cel7A from Geotrichum Candidum 3C. FEBS J. (2015)

Release Date

2015-09-23

Peptides

CELLOBIOHYDROLASE CEL7A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CELLOBIOHYDROLASE CEL7A

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