SMTL ID : 5a6o.1

Crystal structure of the apo form of the unphosphorylated human death associated protein kinase 3 (DAPK3)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: Q.17, A.19, K.36, I.38, E.58, G.157 Ligands: GOL.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.17, A:K.36, A:E.58, A:G.157 Water bridges: A:E.58, A:G.157 GOL.2: 8 residues within 4Å: Chain A: K.36, E.58, L.62, I.71, I.154, D.155, F.156 Ligands: GOL.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.36, A:K.36, A:E.58, A:D.155, A:F.156 Water bridges: A:G.157 GOL.4: 7 residues within 4Å: Chain B: K.36, E.58, L.62, I.71, I.154, D.155, F.156 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:K.36, B:K.36, B:E.58, B:E.58, B:D.155, B:F.156

2 x PGO: S-1,2-PROPANEDIOL(Non-covalent)

PGO.3: 4 residues within 4Å: Chain A: F.96, I.203, L.204, G.207 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.96 Hydrogen bonds: A:I.203 PGO.5: 6 residues within 4Å: Chain B: F.96, L.99, A.100, I.203, L.204, G.207 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:L.99, B:A.100 Hydrogen bonds: B:I.203, B:L.204, B:G.207

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rodrigues, T. et al., De Novo Fragment Design for Drug Discovery and Chemical Biology. Angew.Chem.Int.Ed.Engl. (2015)

Release Date

2015-10-21

Peptides

DEATH-ASSOCIATED PROTEIN KINASE 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DEATH-ASSOCIATED PROTEIN KINASE 3

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