SMTL ID : 5a7c.1 (3 other biounits)

Crystal structure of the second bromodomain of human BRD3 in complex with compound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x 5D4: N-(6-ACETAMIDOHEXYL)ACETAMIDE

5D4.1: 7 residues within 4Å: Chain A: W.29, P.30, F.31, V.35, L.40, C.84, N.88 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.31, A:V.35, A:L.40 Hydrogen bonds: A:N.88

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: Y.11, S.14, I.15, E.18, R.108 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.14, A:E.18 EDO.3: 5 residues within 4Å: Chain A: L.20, S.21, K.22, A.25, Y.32 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.32, A:Y.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nilsson, L.M. et al., Cancer Differentiating Agent Hexamethylene Bisacetamide Inhibits Bet Bromodomain Proteins. Cancer Res. (2016)

Release Date

2016-03-16

Peptides

BROMODOMAIN-CONTAINING PROTEIN 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BROMODOMAIN-CONTAINING PROTEIN 3

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