- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x BGC- BGC- BGC- BGC: beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- 3 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 2 residues within 4Å:- Chain A: V.178, V.181
5 PLIP interactions:2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:V.178, A:V.181, H2O.6, H2O.6, H2O.7
MG.17: 2 residues within 4Å:- Chain B: V.178, V.181
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:V.178, B:V.181, H2O.17, H2O.17, H2O.17
MG.31: 2 residues within 4Å:- Chain C: V.178, V.181
5 PLIP interactions:2 interactions with chain C, 3 Ligand-Water interactions- Metal complexes: C:V.178, C:V.181, H2O.28, H2O.28, H2O.28
- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 4 residues within 4Å:- Chain A: A.302, H.303, I.304, K.307
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:A.302, A:I.304
- Salt bridges: A:K.307
SO4.5: 3 residues within 4Å:- Chain A: E.125, R.128, W.129
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:W.129
- Salt bridges: A:R.128
SO4.18: 4 residues within 4Å:- Chain B: A.302, H.303, I.304, K.307
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:A.302, B:I.304
- Salt bridges: B:K.307
SO4.19: 3 residues within 4Å:- Chain B: E.125, R.128, W.129
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:W.129
- Salt bridges: B:R.128
SO4.32: 4 residues within 4Å:- Chain C: A.302, H.303, I.304, K.307
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:A.302, C:I.304
- Salt bridges: C:K.307
SO4.33: 3 residues within 4Å:- Chain C: E.125, R.128, W.129
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:W.129
- Salt bridges: C:R.128
- 9 x GOL: GLYCEROL(Non-functional Binders)
GOL.6: 5 residues within 4Å:- Chain A: Y.36, P.37, R.169, F.173
- Chain B: M.193
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.169
- Water bridges: A:R.169, A:R.169
GOL.7: 5 residues within 4Å:- Chain A: R.82, D.335
- Chain C: W.32, D.33
- Ligands: PGE.11
6 PLIP interactions:4 interactions with chain A, 2 interactions with chain C- Hydrogen bonds: A:R.82, A:R.82, A:D.335
- Water bridges: A:K.78, C:D.30, C:D.30
GOL.8: 4 residues within 4Å:- Chain A: T.47, Q.48, F.50, D.61
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.48, A:D.61
GOL.20: 5 residues within 4Å:- Chain B: Y.36, P.37, R.169, F.173
- Chain C: M.193
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.169
- Water bridges: B:R.169, B:R.169
GOL.21: 5 residues within 4Å:- Chain A: W.32, D.33
- Chain B: R.82, D.335
- Ligands: PGE.25
5 PLIP interactions:4 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:R.82, B:R.82, B:D.335
- Water bridges: B:K.78, A:D.30
GOL.22: 4 residues within 4Å:- Chain B: T.47, Q.48, F.50, D.61
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:Q.48, B:D.61
- Water bridges: B:D.61
GOL.34: 5 residues within 4Å:- Chain A: M.193
- Chain C: Y.36, P.37, R.169, F.173
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:R.169
- Water bridges: C:R.169, C:R.169
GOL.35: 5 residues within 4Å:- Chain B: W.32, D.33
- Chain C: R.82, D.335
- Ligands: PGE.39
5 PLIP interactions:4 interactions with chain C, 1 interactions with chain B- Hydrogen bonds: C:R.82, C:R.82, C:D.335
- Water bridges: C:K.78, B:D.30
GOL.36: 4 residues within 4Å:- Chain C: T.47, Q.48, F.50, D.61
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:Q.48, C:D.61
- 18 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
PGE.9: 6 residues within 4Å:- Chain A: R.112, D.158, T.159, T.160, E.163
- Chain C: K.162
Ligand excluded by PLIPPGE.10: 4 residues within 4Å:- Chain A: W.85, Q.86, H.122, E.125
Ligand excluded by PLIPPGE.11: 5 residues within 4Å:- Chain A: P.334, D.335, D.343, W.344
- Ligands: GOL.7
Ligand excluded by PLIPPGE.12: 2 residues within 4Å:- Chain A: G.194, R.200
Ligand excluded by PLIPPGE.13: 3 residues within 4Å:- Chain A: Y.217, K.221, G.248
Ligand excluded by PLIPPGE.14: 2 residues within 4Å:- Chain A: M.193
- Chain C: Y.36
Ligand excluded by PLIPPGE.23: 6 residues within 4Å:- Chain A: K.162
- Chain B: R.112, D.158, T.159, T.160, E.163
Ligand excluded by PLIPPGE.24: 4 residues within 4Å:- Chain B: W.85, Q.86, H.122, E.125
Ligand excluded by PLIPPGE.25: 5 residues within 4Å:- Chain B: P.334, D.335, D.343, W.344
- Ligands: GOL.21
Ligand excluded by PLIPPGE.26: 2 residues within 4Å:- Chain B: G.194, R.200
Ligand excluded by PLIPPGE.27: 3 residues within 4Å:- Chain B: Y.217, K.221, G.248
Ligand excluded by PLIPPGE.28: 2 residues within 4Å:- Chain A: Y.36
- Chain B: M.193
Ligand excluded by PLIPPGE.37: 6 residues within 4Å:- Chain B: K.162
- Chain C: R.112, D.158, T.159, T.160, E.163
Ligand excluded by PLIPPGE.38: 4 residues within 4Å:- Chain C: W.85, Q.86, H.122, E.125
Ligand excluded by PLIPPGE.39: 5 residues within 4Å:- Chain C: P.334, D.335, D.343, W.344
- Ligands: GOL.35
Ligand excluded by PLIPPGE.40: 2 residues within 4Å:- Chain C: G.194, R.200
Ligand excluded by PLIPPGE.41: 3 residues within 4Å:- Chain C: Y.217, K.221, G.248
Ligand excluded by PLIPPGE.42: 2 residues within 4Å:- Chain B: Y.36
- Chain C: M.193
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lafond, M. et al., The Quaternary Structure of a Glycoside Hydrolase Dictates Specificity Towards Beta-Glucans. J.Biol.Chem. (2016)
- Release Date
- 2016-01-20
- Peptides
- PUTATIVE RETAINING B-GLYCOSIDASE: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x BGC- BGC- BGC- BGC: beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- 3 x MG: MAGNESIUM ION(Non-covalent)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 9 x GOL: GLYCEROL(Non-functional Binders)
- 18 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lafond, M. et al., The Quaternary Structure of a Glycoside Hydrolase Dictates Specificity Towards Beta-Glucans. J.Biol.Chem. (2016)
- Release Date
- 2016-01-20
- Peptides
- PUTATIVE RETAINING B-GLYCOSIDASE: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A