- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x BGC- BGC- BGC- BGC: beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
- 3 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 3 residues within 4Å:- Chain A: V.178, V.181, V.223
5 PLIP interactions:2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:V.178, A:V.181, H2O.10, H2O.10, H2O.10
MG.10: 3 residues within 4Å:- Chain B: V.178, V.181, V.223
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:V.178, B:V.181, H2O.26, H2O.26, H2O.26
MG.18: 3 residues within 4Å:- Chain C: V.178, V.181, V.223
5 PLIP interactions:2 interactions with chain C, 3 Ligand-Water interactions- Metal complexes: C:V.178, C:V.181, H2O.42, H2O.42, H2O.43
- 3 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 3 residues within 4Å:- Chain A: E.125, R.128, W.129
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.128
SO4.11: 3 residues within 4Å:- Chain B: E.125, R.128, W.129
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:R.128
SO4.19: 3 residues within 4Å:- Chain C: E.125, R.128, W.129
1 PLIP interactions:1 interactions with chain C- Salt bridges: C:R.128
- 3 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 5 residues within 4Å:- Chain A: Y.36, P.37, R.169, F.173
- Chain B: M.193
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.169, A:R.169
- Water bridges: A:R.169
GOL.12: 5 residues within 4Å:- Chain B: Y.36, P.37, R.169, F.173
- Chain C: M.193
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.169, B:R.169
- Water bridges: B:R.169
GOL.20: 5 residues within 4Å:- Chain A: M.193
- Chain C: Y.36, P.37, R.169, F.173
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:R.169, C:R.169
- Water bridges: C:R.169
- 3 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
PGE.5: 6 residues within 4Å:- Chain A: R.112, D.158, T.159, T.160, E.163
- Chain C: K.162
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: A:D.158
- Water bridges: C:K.162
PGE.13: 6 residues within 4Å:- Chain A: K.162
- Chain B: R.112, D.158, T.159, T.160, E.163
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Water bridges: A:K.162
- Hydrogen bonds: B:D.158
PGE.21: 6 residues within 4Å:- Chain B: K.162
- Chain C: R.112, D.158, T.159, T.160, E.163
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain B- Hydrogen bonds: C:D.158
- Water bridges: B:K.162
- 3 x GXT: ethanedial(Non-covalent)
GXT.6: 2 residues within 4Å:- Chain A: G.194, R.200
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.200, A:R.200
- Water bridges: A:N.195
GXT.14: 2 residues within 4Å:- Chain B: G.194, R.200
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.200, B:R.200
- Water bridges: B:N.195
GXT.22: 2 residues within 4Å:- Chain C: G.194, R.200
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:R.200, C:R.200
- Water bridges: C:N.195
- 6 x CL: CHLORIDE ION(Non-functional Binders)
CL.7: 5 residues within 4Å:- Chain A: T.191, T.192, R.200, F.230, N.231
Ligand excluded by PLIPCL.8: 2 residues within 4Å:- Chain A: H.303, I.304
Ligand excluded by PLIPCL.15: 5 residues within 4Å:- Chain B: T.191, T.192, R.200, F.230, N.231
Ligand excluded by PLIPCL.16: 2 residues within 4Å:- Chain B: H.303, I.304
Ligand excluded by PLIPCL.23: 5 residues within 4Å:- Chain C: T.191, T.192, R.200, F.230, N.231
Ligand excluded by PLIPCL.24: 2 residues within 4Å:- Chain C: H.303, I.304
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lafond, M. et al., The Quaternary Structure of a Glycoside Hydrolase Dictates Specificity Towards Beta-Glucans. J.Biol.Chem. (2016)
- Release Date
- 2016-01-20
- Peptides
- PUTATIVE RETAINING B-GLYCOSIDASE: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x BGC- BGC- BGC- BGC: beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
- 3 x MG: MAGNESIUM ION(Non-covalent)
- 3 x SO4: SULFATE ION(Non-functional Binders)
- 3 x GOL: GLYCEROL(Non-functional Binders)
- 3 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 3 x GXT: ethanedial(Non-covalent)
- 6 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lafond, M. et al., The Quaternary Structure of a Glycoside Hydrolase Dictates Specificity Towards Beta-Glucans. J.Biol.Chem. (2016)
- Release Date
- 2016-01-20
- Peptides
- PUTATIVE RETAINING B-GLYCOSIDASE: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A