SMTL ID : 5ab1.1 (1 other biounit)

Complex of the FimH lectin with a beta-cyclodextrin C-linked alpha-D-mannoside in cocrystallized orthorhombic crystals at 2.00 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

monomer

Ligands

1 x GLC- GLC- GLC- GLC- GLC- GLC- GLC: Cycloheptakis-(1-4)-(alpha-D-glucopyranose)(Non-functional Binders)

GLC-GLC-GLC-GLC-GLC-GLC-GLC.1: 1 residues within 4Å: Ligands: TA5.2 No protein-ligand interaction detected (PLIP)

1 x TA5: 2H-1,2,3-TRIAZOL-4-YLMETHANOL(Non-covalent)

TA5.2: 3 residues within 4Å: Chain A: Y.69 Ligands: GLC-GLC-GLC-GLC-GLC-GLC-GLC.1, HP6.3 No protein-ligand interaction detected (PLIP)

1 x HP6: HEPTANE(Non-covalent)

HP6.3: 3 residues within 4Å: Chain A: Y.69 Ligands: TA5.2, MAN.4 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.69, A:Y.69

1 x MAN: alpha-D-mannopyranose(Non-covalent)

MAN.4: 12 residues within 4Å: Chain A: F.22, I.34, N.67, D.68, Y.69, I.73, D.75, Q.154, N.156, D.161, F.163 Ligands: HP6.3 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:F.22, A:N.67, A:D.68, A:Y.69, A:Q.154, A:N.156, A:D.161 Water bridges: A:G.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dorta, D.A. et al., The Anti-Adhesive Strategy in Crohn'S Disease: Orally Active Mannosides to Decolonize Pathogenic Escherichia Coli from the Gut. Chembiochem (2016)

Release Date

2016-05-11

Peptides

FIMH: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

FIMH

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