SMTL ID : 5adq.1

Crystal structure of human tankyrase 2 in complex with JW55

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.159, H.162, C.167, C.170 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.159, A:H.162, A:C.167, A:C.170

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: R.55, H.57, R.58, K.145, Q.148 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.58, A:Q.148 Salt bridges: A:R.55, A:H.57, A:K.145 SO4.3: 4 residues within 4Å: Chain A: N.68, R.69 Chain B: P.46, E.47 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:E.47, A:N.68 Salt bridges: A:R.69

1 x A95: N-(4-(((4-(4-methoxyphenyl)oxan-4- yl)methyl)carbamoyl)phenyl)furan-2-carboxamide(Non-covalent)

A95.4: 18 residues within 4Å: Chain A: H.109, P.112, F.113, A.116, I.117, G.121, F.122, D.123, H.126, A.127, I.129, G.131, G.136, I.137, Y.138, Y.149, G.152, I.153 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.113, A:F.113, A:A.116, A:D.123, A:A.127, A:I.137, A:Y.149, A:Y.149, A:I.153 Hydrogen bonds: A:D.123, A:Y.138, A:I.153 Water bridges: A:G.136

1 x BCT: BICARBONATE ION(Non-functional Binders)

BCT.5: 5 residues within 4Å: Chain A: F.108, H.109, G.110, Y.138, S.146 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:E.24, A:H.109, A:G.110, A:G.110

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 7 residues within 4Å: Chain A: S.52, T.53, V.54, R.55, N.142 Chain B: L.20, L.22 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:V.54, A:N.142, B:L.20

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Haikarainen, T. et al., Development and Structural Analysis of Adenosine Site Binding Tankyrase Inhibitors. Bioorg.Med.Chem.Lett. (2016)

Release Date

2016-01-13

Peptides

TANKYRASE-2: A
TANKYRASE-2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

TANKYRASE-2

TANKYRASE-2

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