SMTL ID : 5adr.1

Crystal structure of human tankyrase 2 in complex with OD38

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: R.55, H.57, R.58, K.145, Q.148 9 PLIP interactions: 8 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.58, A:Q.148 Water bridges: A:R.58, A:D.59, A:K.145, B:N.18 Salt bridges: A:R.55, A:H.57, A:K.145 SO4.5: 4 residues within 4Å: Chain A: N.68, R.69 Chain B: P.46, E.47 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.68, B:E.47 Water bridges: A:N.68 Salt bridges: A:R.69

1 x QS5: N-(4-(((4-(4-methoxyphenyl)oxan-4- yl)methyl)carbamoyl)phenyl)-5-methylfuran-2-carboxamide(Non-covalent)

QS5.2: 18 residues within 4Å: Chain A: H.109, P.112, F.113, A.116, I.117, G.121, F.122, D.123, H.126, A.127, I.129, G.131, G.136, I.137, Y.138, Y.149, G.152, I.153 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.113, A:D.123, A:A.127, A:I.137, A:Y.149, A:Y.149, A:I.153 Hydrogen bonds: A:D.123, A:Y.138, A:I.153 Water bridges: A:I.129, A:M.132

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: C.159, H.162, C.167, C.170 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.159, A:H.162, A:C.167, A:C.170

1 x BCT: BICARBONATE ION(Non-functional Binders)

BCT.4: 7 residues within 4Å: Chain A: F.108, H.109, G.110, Y.138, F.139, A.140, S.146 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.110, A:G.110, A:S.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Haikarainen, T. et al., Development and Structural Analysis of Adenosine Site Binding Tankyrase Inhibitors. Bioorg.Med.Chem.Lett. (2016)

Release Date

2016-01-13

Peptides

TANKYRASE-2: A
TANKYRASE-2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

TANKYRASE-2

TANKYRASE-2

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