SMTL ID : 5ads.1

Crystal structure of human tankyrase 2 in complex with OD39

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.159, H.162, C.167, C.170 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.159, A:H.162, A:C.167, A:C.170

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: R.55, H.57, R.58, K.145, Q.148 12 PLIP interactions: 11 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.58, A:Q.148 Water bridges: A:R.58, A:D.59, A:D.59, A:K.145, A:M.191, A:M.191, B:N.18 Salt bridges: A:R.55, A:H.57, A:K.145 SO4.3: 4 residues within 4Å: Chain A: N.68, R.69 Chain B: P.46, E.47 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:N.68, B:E.47 Water bridges: A:N.68, B:M.44 Salt bridges: A:R.69

1 x QNS: N-[3-chloranyl-4-[[4-(4-methoxyphenyl)oxan-4-yl]methylcarbamoyl]phenyl]furan-2-carboxamide(Non-covalent)

QNS.4: 17 residues within 4Å: Chain A: H.109, P.112, F.113, A.116, I.117, G.121, F.122, D.123, H.126, I.129, G.131, G.136, I.137, Y.138, Y.149, G.152, I.153 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.113, A:D.123, A:I.129, A:I.137, A:Y.149, A:Y.149, A:I.153 Hydrogen bonds: A:D.123, A:Y.138, A:I.153 Water bridges: A:H.126, A:H.126 pi-Stacking: A:H.126

1 x BCT: BICARBONATE ION(Non-functional Binders)

BCT.5: 5 residues within 4Å: Chain A: F.108, H.109, G.110, Y.138, S.146 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.110, A:G.110, A:S.146

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 8 residues within 4Å: Chain A: R.55, E.56, H.57, G.60, G.61, G.65, I.66, F.67 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.57, A:H.57, A:F.67, A:F.67 Water bridges: A:F.67 GOL.8: 7 residues within 4Å: Chain A: S.52, T.53, V.54, R.55, N.142 Chain B: L.20, L.22 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.52, A:N.142, A:N.142, B:L.20 Water bridges: A:E.56

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.7: 6 residues within 4Å: Chain A: C.79, N.80, W.84, R.178 Chain B: Y.34, E.36 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:Y.34, B:E.36, A:N.80, A:R.178

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Haikarainen, T. et al., Development and Structural Analysis of Adenosine Site Binding Tankyrase Inhibitors. Bioorg.Med.Chem.Lett. (2016)

Release Date

2016-01-13

Peptides

TANKYRASE-2: A
TANKYRASE-2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

TANKYRASE-2

TANKYRASE-2

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