SMTL ID : 5afs.1

structure of Zn-bound periplasmic metal binding protein from candidatus liberibacter asiaticus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.22 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: V.28, T.29, T.30, E.33, K.50 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:V.28, A:T.30, A:E.33 Water bridges: A:T.30, A:T.30, A:E.33, A:K.50 Salt bridges: A:K.50 SO4.2: 4 residues within 4Å: Chain A: Y.245, S.250, K.251, G.254 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.245, A:K.251 Salt bridges: A:K.251 SO4.3: 3 residues within 4Å: Chain A: T.44, A.46, D.47 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.44, A:D.47 Water bridges: A:S.45 SO4.4: 2 residues within 4Å: Chain A: S.150, R.264 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.264, A:R.264 Salt bridges: A:R.264 SO4.5: 2 residues within 4Å: Chain A: D.261, R.264 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.264, A:R.264 Salt bridges: A:R.264

1 x ZN: ZINC ION(Non-covalent)

ZN.6: 5 residues within 4Å: Chain A: H.39, H.106, E.172, N.193, D.247 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.39, A:H.106, A:E.172, A:E.172, A:D.247

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 3 residues within 4Å: Chain A: H.205, N.208, Q.209 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.205, A:Q.209 Water bridges: A:R.204 GOL.8: 4 residues within 4Å: Chain A: S.199, P.200, S.201, R.204 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.204, A:R.204 GOL.9: 2 residues within 4Å: Chain A: R.122, K.123 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.122, A:R.122

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.10: 6 residues within 4Å: Chain A: S.12, G.15, D.16, T.30, E.33, L.249 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:D.16, A:L.249 Hydrogen bonds: A:T.30 Water bridges: A:E.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sharma, N. et al., Crystal structure analysis in Zn(2+)-bound state and biophysical characterization of CLas-ZnuA2. Biochim. Biophys. Acta (2016)

Release Date

2016-02-24

Peptides

PERIPLASMIC SOLUTE BINDING PROTEIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PERIPLASMIC SOLUTE BINDING PROTEIN

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