SMTL ID : 5ag2.1

SOD-3 azide complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

homo-dimer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: H.27, H.75, D.156, H.160 Ligands: AZI.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.27, A:H.75, A:D.156, A:H.160, H2O.4 MN.5: 5 residues within 4Å: Chain B: H.27, H.75, D.156, H.160 Ligands: AZI.6 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.27, B:H.75, B:D.156, B:H.160, H2O.12

2 x AZI: AZIDE ION(Non-covalent)

AZI.2: 8 residues within 4Å: Chain A: H.27, H.31, H.32, Y.35, H.75, Q.143, H.160 Ligands: MN.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.27, A:H.31, A:Y.35, A:Q.143, A:H.160 AZI.6: 7 residues within 4Å: Chain B: H.27, H.31, H.32, Y.35, H.75, H.160 Ligands: MN.5 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.160 Water bridges: B:Q.143

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 3 residues within 4Å: Chain A: H.3, T.4, H.72 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.3, A:H.72

1 x MLI: MALONATE ION(Non-functional Binders)

MLI.4: 3 residues within 4Å: Chain A: N.168, V.169, P.171 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.168

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.7: 2 residues within 4Å: Chain B: K.52, N.54 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.54 Salt bridges: B:K.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hunter, G.J. et al., The Structure of the Caenorhabditis Elegans Manganese Superoxide Dismutase Mnsod-3-Azide Complex. Protein Sci. (2015)

Release Date

2016-01-13

Peptides

SUPEROXIDE DISMUTASE [MN] 2, MITOCHONDRIAL: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

SUPEROXIDE DISMUTASE [MN] 2, MITOCHONDRIAL

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