SMTL ID : 5aju.1

Crystal structure of ligand-free phosphoribohydroxylase lonely guy from Claviceps purpurea in complex with phosphoribose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x RP5: 5-O-phosphono-beta-D-ribofuranose(Non-covalent)

RP5.1: 11 residues within 4Å: Chain A: G.67, S.68, M.104, M.162, R.165, G.188, Y.189, G.190, T.191, E.194 Chain B: Q.203 10 PLIP interactions: 8 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:S.68, A:R.165, A:R.165, A:G.188, A:G.190, A:T.191, A:E.194, B:Q.203 Salt bridges: A:R.165 Water bridges: B:Q.237 RP5.3: 11 residues within 4Å: Chain A: Q.203 Chain B: G.67, S.68, M.104, M.162, R.165, G.188, Y.189, G.190, T.191, E.194 10 PLIP interactions: 8 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:S.68, B:R.165, B:R.165, B:G.188, B:G.190, B:T.191, B:E.194, A:Q.203 Salt bridges: B:R.165 Water bridges: A:Q.237

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.130, D.134, G.135, T.136 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.136 Salt bridges: A:R.130 SO4.4: 4 residues within 4Å: Chain B: R.130, D.134, G.135, T.136 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.136 Salt bridges: B:R.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dzurova, L. et al., The Three-Dimensional Structure of "Lonely Guy" from Claviceps Purpurea Provides Insights Into the Phosphoribohydrolase Function of Rossmann Fold-Containing Lysine Decarboxylase-Like Proteins. Proteins (2015)

Release Date

2015-06-03

Peptides

PHOSPHORIBOHYDROLASE LONELY GUY: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

PHOSPHORIBOHYDROLASE LONELY GUY

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