SMTL ID : 5axr.1

Crystal Structure of Metallo-beta-Lactamase SMB-1 Bound to 2-mercaptoethanesulfonate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.72, H.74, H.150 Ligands: ZN.2, COM.9 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.72, A:H.74, A:H.150 ZN.2: 5 residues within 4Å: Chain A: D.76, H.77, H.215 Ligands: ZN.1, COM.9 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.76, A:H.77, A:H.215

6 x NA: SODIUM ION(Non-functional Binders)

NA.3: 4 residues within 4Å: Chain A: P.8, Q.9, V.50, N.54 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.9, A:Q.9, A:N.54 NA.4: 6 residues within 4Å: Chain A: S.70, T.71, A.94, G.95, G.153, I.155 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.70, A:G.95, A:I.155 Water bridges: A:N.98 NA.5: 4 residues within 4Å: Chain A: T.13, A.228, N.233, Y.236 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.13 Water bridges: A:N.233 NA.6: 7 residues within 4Å: Chain A: D.209, I.210, A.211, N.219, Y.236, D.238, A.241 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.209, A:A.211, A:N.219, A:D.238 NA.7: 4 residues within 4Å: Chain A: E.231, G.232, N.233, S.234 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.233, A:S.234 Water bridges: A:E.163 NA.8: 2 residues within 4Å: Chain A: F.12, T.13 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.13, A:T.13, A:T.13

1 x COM: 1-THIOETHANESULFONIC ACID(Non-covalent)

COM.9: 12 residues within 4Å: Chain A: W.5, H.72, H.74, D.76, H.77, Q.113, L.117, H.150, V.179, H.215 Ligands: ZN.1, ZN.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.113 Salt bridges: A:H.215

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wachino, J. et al., Crystal Structure of Metallo-beta-Lactamase SMB-1 Bound to 2-mercaptoethanesulfonate. To Be Published

Release Date

2016-05-11

Peptides

Metallo-beta-lactamase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Metallo-beta-lactamase

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