SMTL ID : 5aya.1

Crystal Structure of Metallo-beta-Lactamase SMB-1 Bound to L-captopril

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.72, H.74, H.150 Ligands: ZN.2, X8Z.7 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.72, A:H.74, A:H.150 ZN.2: 5 residues within 4Å: Chain A: D.76, H.77, H.215 Ligands: ZN.1, X8Z.7 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.76, A:H.77, A:H.215

2 x NA: SODIUM ION(Non-functional Binders)

NA.3: 5 residues within 4Å: Chain A: N.17, L.31, L.140, Q.160, S.161 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.17, A:Q.160 NA.4: 6 residues within 4Å: Chain A: S.70, T.71, A.94, G.95, G.153, I.155 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.70, A:G.95, A:I.155 Water bridges: A:S.70

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 4 residues within 4Å: Chain A: R.56, K.61, L.62, S.63 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.62, A:S.63, A:S.63 Salt bridges: A:R.56 SO4.6: 4 residues within 4Å: Chain A: H.189, P.190, E.191, V.192 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.189, A:E.191, A:V.192 Salt bridges: A:H.189

1 x X8Z: L-CAPTOPRIL(Non-covalent)

X8Z.7: 13 residues within 4Å: Chain A: H.72, H.74, D.76, H.77, H.150, S.175, T.177, V.179, H.215, E.217, R.252 Ligands: ZN.1, ZN.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.179 Hydrogen bonds: A:T.177 Water bridges: A:T.177 Salt bridges: A:R.252

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wachino, J. et al., Crystal Structure of Metallo-beta-Lactamase SMB-1 Bound to L-captopril. To Be Published

Release Date

2016-05-11

Peptides

Metallo-beta-lactamase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Metallo-beta-lactamase

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