- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.19 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 4 x 3HR: (3R)-3-hydroxybutanoic acid(Non-functional Binders)
3HR.2: 10 residues within 4Å:- Chain A: Q.94, S.142, H.144, K.152, Y.155, W.187, L.192, Q.196, W.257
- Ligands: NAD.1
12 PLIP interactions:12 interactions with chain A- Hydrophobic interactions: A:W.187, A:W.187, A:L.192, A:W.257
- Hydrogen bonds: A:Q.94, A:S.142, A:H.144, A:Y.155, A:Y.155, A:Q.196
- Salt bridges: A:H.144, A:K.152
3HR.5: 10 residues within 4Å:- Chain B: Q.94, S.142, H.144, K.152, Y.155, W.187, L.192, Q.196, W.257
- Ligands: NAD.4
12 PLIP interactions:12 interactions with chain B- Hydrophobic interactions: B:W.187, B:W.187, B:L.192, B:W.257
- Hydrogen bonds: B:Q.94, B:S.142, B:H.144, B:Y.155, B:Y.155, B:Q.196
- Salt bridges: B:H.144, B:K.152
3HR.8: 10 residues within 4Å:- Chain C: Q.94, S.142, H.144, K.152, Y.155, W.187, L.192, Q.196, W.257
- Ligands: NAD.7
10 PLIP interactions:10 interactions with chain C- Hydrophobic interactions: C:W.187, C:W.187, C:L.192, C:W.257
- Hydrogen bonds: C:Q.94, C:S.142, C:Y.155, C:Q.196
- Salt bridges: C:H.144, C:K.152
3HR.11: 10 residues within 4Å:- Chain D: Q.94, S.142, H.144, K.152, Y.155, W.187, L.192, Q.196, W.257
- Ligands: NAD.10
10 PLIP interactions:10 interactions with chain D- Hydrophobic interactions: D:W.187, D:W.187, D:L.192, D:W.257
- Hydrogen bonds: D:Q.94, D:S.142, D:Y.155, D:Q.196
- Salt bridges: D:H.144, D:K.152
- 4 x NA: SODIUM ION(Non-functional Binders)
NA.3: 5 residues within 4Å:- Chain A: V.147, R.260
- Chain D: V.147, R.260
- Ligands: NA.12
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.260
NA.6: 5 residues within 4Å:- Chain B: V.147, R.260
- Chain C: V.147, R.260
- Ligands: NA.9
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:R.260
NA.9: 5 residues within 4Å:- Chain B: V.147, R.260
- Chain C: V.147, R.260
- Ligands: NA.6
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:R.260
NA.12: 5 residues within 4Å:- Chain A: V.147, R.260
- Chain D: V.147, R.260
- Ligands: NA.3
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.260
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kanazawa, H. et al., Structural insights into the catalytic reaction trigger and inhibition of D-3-hydroxybutyrate dehydrogenase. Acta Crystallogr.,Sect.F (2016)
- Release Date
- 2016-08-17
- Peptides
- 3-hydroxybutyrate dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.19 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 4 x 3HR: (3R)-3-hydroxybutanoic acid(Non-functional Binders)
- 4 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kanazawa, H. et al., Structural insights into the catalytic reaction trigger and inhibition of D-3-hydroxybutyrate dehydrogenase. Acta Crystallogr.,Sect.F (2016)
- Release Date
- 2016-08-17
- Peptides
- 3-hydroxybutyrate dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A