SMTL ID : 5b8a.1

Crystal structure of oxidized chimeric EcAhpC1-186-YFSKHN

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-10-mer

Ligands

23 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: P.40, V.46, R.112, R.120, E.139 Ligands: GOL.5 Ligand excluded by PLIP SO4.2: 4 residues within 4Å: Chain A: P.48, S.86, E.87, T.88 Ligand excluded by PLIP SO4.3: 5 residues within 4Å: Chain A: G.19, E.20, F.21, K.80 Chain F: F.45 Ligand excluded by PLIP SO4.6: 7 residues within 4Å: Chain B: Y.39, P.40, V.46, C.47, P.48, E.50, R.120 Ligand excluded by PLIP SO4.7: 7 residues within 4Å: Chain B: K.17, Y.58, D.67, V.68, Y.69, Y.94, A.95 Ligand excluded by PLIP SO4.8: 6 residues within 4Å: Chain B: P.40, V.46, R.112, R.120, E.139 Ligands: GOL.9 Ligand excluded by PLIP SO4.11: 5 residues within 4Å: Chain B: F.45 Chain C: G.19, E.20, F.21, K.80 Ligand excluded by PLIP SO4.12: 5 residues within 4Å: Chain D: G.19, E.20, F.21, K.80 Chain E: F.45 Ligand excluded by PLIP SO4.13: 4 residues within 4Å: Chain D: P.48, S.86, E.87, T.88 Ligand excluded by PLIP SO4.17: 5 residues within 4Å: Chain E: Y.39, C.47, P.48, E.50, L.51 Ligand excluded by PLIP SO4.18: 6 residues within 4Å: Chain E: P.48, S.86, E.87, T.88 Chain J: W.170 Ligands: GOL.22 Ligand excluded by PLIP SO4.19: 5 residues within 4Å: Chain E: F.11, K.12, T.25, E.26, K.27 Ligand excluded by PLIP SO4.20: 4 residues within 4Å: Chain E: R.150 Chain J: D.53, R.143, D.144 Ligand excluded by PLIP SO4.24: 4 residues within 4Å: Chain F: P.48, S.86, E.87, T.88 Ligand excluded by PLIP SO4.25: 7 residues within 4Å: Chain F: Y.39, P.40, C.47, P.48, E.50, L.51, R.120 Ligand excluded by PLIP SO4.27: 4 residues within 4Å: Chain G: P.48, S.86, E.87, T.88 Ligand excluded by PLIP SO4.28: 2 residues within 4Å: Chain G: T.6, K.7 Ligand excluded by PLIP SO4.32: 4 residues within 4Å: Chain H: P.48, S.86, E.87, T.88 Ligand excluded by PLIP SO4.33: 9 residues within 4Å: Chain H: Y.39, V.46, C.47, P.48, T.49, E.50, L.51, W.82, R.120 Ligand excluded by PLIP SO4.36: 6 residues within 4Å: Chain I: Y.39, C.47, P.48, E.50, L.51, R.120 Ligand excluded by PLIP SO4.37: 5 residues within 4Å: Chain I: G.19, E.20, F.21, K.80 Chain J: F.45 Ligand excluded by PLIP SO4.38: 5 residues within 4Å: Chain J: P.48, S.86, E.87, T.88 Ligands: GOL.42 Ligand excluded by PLIP SO4.39: 7 residues within 4Å: Chain J: V.46, C.47, E.50, R.120, G.140, I.141, G.142 Ligand excluded by PLIP

22 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 7 residues within 4Å: Chain A: K.7, E.26, T.29, E.30, P.127, Q.128, G.129 Ligand excluded by PLIP GOL.5: 10 residues within 4Å: Chain A: Y.39, A.41, T.44, V.46, C.47, P.48, E.50, L.51, R.120 Ligands: SO4.1 Ligand excluded by PLIP GOL.9: 6 residues within 4Å: Chain B: T.44, R.112, E.115, L.117 Chain C: F.77 Ligands: SO4.8 Ligand excluded by PLIP GOL.10: 5 residues within 4Å: Chain B: P.10, F.11, K.12, T.25, E.26 Ligand excluded by PLIP GOL.14: 6 residues within 4Å: Chain D: K.17, Y.58, D.67, V.68, Y.69, A.95 Ligand excluded by PLIP GOL.15: 2 residues within 4Å: Chain D: C.47, G.140 Ligand excluded by PLIP GOL.16: 10 residues within 4Å: Chain D: Y.39, P.40, A.41, T.44, V.46, C.47, P.48, E.50, L.51, R.120 Ligand excluded by PLIP GOL.21: 9 residues within 4Å: Chain D: P.100, T.101, R.106, M.111, G.116 Chain E: P.100, T.101, R.106, M.111 Ligand excluded by PLIP GOL.22: 5 residues within 4Å: Chain E: F.43, T.44, F.45, W.82 Ligands: SO4.18 Ligand excluded by PLIP GOL.23: 6 residues within 4Å: Chain E: S.2 Chain J: L.3, F.108, D.109, N.110, V.136 Ligand excluded by PLIP GOL.26: 3 residues within 4Å: Chain F: F.16, G.19, H.83 Ligand excluded by PLIP GOL.29: 4 residues within 4Å: Chain G: W.33, Q.156, A.159, S.160 Ligand excluded by PLIP GOL.30: 7 residues within 4Å: Chain G: K.7, I.8, E.26, T.29, E.30, Q.128, G.129 Ligand excluded by PLIP GOL.31: 8 residues within 4Å: Chain G: Y.39, A.41, T.44, V.46, C.47, E.50, L.51, R.120 Ligand excluded by PLIP GOL.34: 5 residues within 4Å: Chain H: D.109, I.134 Chain I: S.2, L.3, I.134 Ligand excluded by PLIP GOL.35: 8 residues within 4Å: Chain H: K.7, I.8, E.26, T.29, E.30, P.127, Q.128, G.129 Ligand excluded by PLIP GOL.40: 9 residues within 4Å: Chain J: Y.39, T.44, V.46, C.47, P.48, E.50, L.51, W.82, R.120 Ligand excluded by PLIP GOL.41: 5 residues within 4Å: Chain I: D.114 Chain J: K.12, Q.14, E.23, T.101 Ligand excluded by PLIP GOL.42: 5 residues within 4Å: Chain J: F.43, T.44, W.82, S.85 Ligands: SO4.38 Ligand excluded by PLIP GOL.43: 4 residues within 4Å: Chain J: S.84, S.85, S.86, E.87 Ligand excluded by PLIP GOL.44: 8 residues within 4Å: Chain I: F.77 Chain J: P.40, T.44, V.46, R.112, E.115, L.117, E.139 Ligand excluded by PLIP GOL.45: 5 residues within 4Å: Chain J: F.11, K.12, T.25, E.26, K.27 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kamariah, N. et al., Transition steps in peroxide reduction and a molecular switch for peroxide robustness of prokaryotic peroxiredoxins. Sci Rep (2016)

Release Date

2017-02-01

Peptides

Alkyl hydroperoxide reductase subunit C,Peroxiredoxin-2: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

Alkyl hydroperoxide reductase subunit C,Peroxiredoxin-2

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