SMTL ID : 5brh.1

Crystal structure of Trypanosoma cruzi glucokinase in complex with inhibitor DBT-GlcN

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x 4V3: 2-deoxy-2-({[(1,1-dioxido-1-benzothiophen-2-yl)methoxy]carbonyl}amino)-beta-D-glucopyranose(Non-covalent)

4V3.1: 15 residues within 4Å: Chain A: G.107, P.108, P.117, F.118, N.119, N.144, D.145, G.200, L.201, G.202, E.221, E.250 Chain B: M.348, F.351, F.353 12 PLIP interactions: 3 interactions with chain B, 9 interactions with chain A Hydrophobic interactions: B:F.351, B:F.351, A:N.119 pi-Cation interactions: B:R.350 Hydrogen bonds: A:N.144, A:N.144, A:E.221, A:E.221 Water bridges: A:G.200, A:G.200, A:L.201, A:E.221 4V3.2: 15 residues within 4Å: Chain A: M.348, F.351, F.353 Chain B: G.107, P.108, P.117, F.118, N.119, N.144, D.145, G.200, L.201, G.202, E.221, E.250 9 PLIP interactions: 8 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:N.119, A:F.351 Hydrogen bonds: B:N.144, B:N.144, B:E.221, B:E.221 Water bridges: B:L.201, B:S.203, B:E.221

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

D'Antonio, E.L. et al., Structure-based approach to the identification of a novel group of selective glucosamine analogue inhibitors of Trypanosoma cruzi glucokinase. Mol.Biochem.Parasitol. (2016)

Release Date

2015-06-17

Peptides

Glucokinase 1, putative: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glucokinase 1, putative

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