SMTL ID : 5bt5.1

Crystal structure of BRD2 second bromodomain in complex with SGC-CBP30 chemical probe

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: Q.102, D.103, E.106, F.107 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.103, A:D.103 Water bridges: A:D.103, A:D.103 EDO.2: 3 residues within 4Å: Chain A: Y.27, M.97, K.100 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.100 EDO.3: 7 residues within 4Å: Chain A: I.48, I.49, K.50, H.51, L.79, N.83, K.86 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.50, A:H.51, A:H.51, A:N.83, A:K.86, A:K.86 EDO.4: 1 residues within 4Å: Chain A: H.43 No protein-ligand interaction detected (PLIP)

1 x 2LO: 2-[2-(3-chloro-4-methoxyphenyl)ethyl]-5-(3,5-dimethyl-1,2-oxazol-4-yl)-1-[(2S)-2-(morpholin-4-yl)propyl]-1H-benzimidazole(Non-covalent)

2LO.5: 12 residues within 4Å: Chain A: W.29, P.30, F.31, K.33, L.40, L.42, C.84, N.88, H.92, D.93, V.94, M.97 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.29, A:W.29, A:P.30, A:F.31, A:L.42, A:V.94 Hydrogen bonds: A:N.88, A:V.94 Water bridges: A:C.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tallant, C. et al., Crystal structure of BRD2 second bromodomain in complex with a 3,5-dimethylisoxazol ligand. To Be Published

Release Date

2015-07-01

Peptides

Bromodomain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 2

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