SMTL ID : 5bvo.1

Fragment-based discovery of potent and selective DDR1/2 inhibitors

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

monomer

Ligands

7 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 2 residues within 4Å: Chain A: F.256, Q.258 Ligand excluded by PLIP IOD.2: 3 residues within 4Å: Chain A: L.294, R.297, Q.311 Ligand excluded by PLIP IOD.3: 3 residues within 4Å: Chain A: E.29, G.33, V.35 Ligand excluded by PLIP IOD.4: 3 residues within 4Å: Chain A: D.92, P.93, R.97 Ligand excluded by PLIP IOD.5: 1 residues within 4Å: Chain A: H.313 Ligand excluded by PLIP IOD.6: 1 residues within 4Å: Chain A: P.70 Ligand excluded by PLIP IOD.7: 4 residues within 4Å: Chain A: G.28, E.29, V.35 Ligands: 4VE.8 Ligand excluded by PLIP

1 x 4VE: N-(5-{(1S)-1-[(5-fluoro-1,3-benzoxazol-2-yl)amino]ethyl}-2-methylphenyl)imidazo[1,2-a]pyridine-3-carboxamide(Non-covalent)

4VE.8: 24 residues within 4Å: Chain A: L.27, V.35, A.64, V.65, K.66, E.83, I.86, M.87, L.90, I.96, M.110, T.112, D.113, Y.114, M.115, G.118, F.173, H.175, L.184, I.193, A.194, D.195, F.196 Ligands: IOD.7 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.27, A:A.64, A:I.86, A:L.90, A:I.96, A:T.112, A:Y.114, A:F.173, A:D.195, A:F.196 Hydrogen bonds: A:E.83, A:T.112, A:M.115, A:D.195

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Murray, C.W. et al., Fragment-Based Discovery of Potent and Selective DDR1/2 Inhibitors. Acs Med.Chem.Lett. (2015)

Release Date

2015-08-05

Peptides

Epithelial discoidin domain-containing receptor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Epithelial discoidin domain-containing receptor 1

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